PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_16831_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 277aa MW: 31155.4 Da PI: 6.7545 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.4 | 2e-11 | 93 | 143 | 1 | 53 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 +r h +Er+RR+++ + ++ Lr+llP ++K s ++ +A++YIk+ cra_locus_16831_iso_1_len_859_ver_3 93 KRIVHRDIERQRRQEMANLYASLRTLLPLeY---IKGKRSLSDQINEAIKYIKY 143 6899*************************77...*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.63E-12 | 90 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.13E-9 | 91 | 149 | No hit | No description |
PROSITE profile | PS50888 | 13.211 | 92 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-8 | 93 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.3E-9 | 93 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
ISGSCPEGSR RIIVVVSIMD DDFNSFFPLQ DDDDAFLFQY TVPTTTVSQQ QQNVKQDLLI 60 LPGSAPSLVL ENNNEKKEKN SAAEEEGSIG KQKRIVHRDI ERQRRQEMAN LYASLRTLLP 120 LEYIKGKRSL SDQINEAIKY IKYKEKNIEQ LNSKKDKMKN FFDGNDNIAE GKVGNTSKSS 180 SCSPVDISIR PCSHGGFEIL ISNQIGEERC LLSSVLEVLI EESLTIVNCF CAKVNDKFIQ 240 TIQTEAIHNT GFDALNLSRK LSQRIKAPIN FKCISSN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 92 | 104 | KRIVHRDIERQRR |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA598 | 24 | 109 |