PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_16828_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family AP2
Protein Properties Length: 388aa    MW: 43147.2 Da    PI: 9.6286
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_16828_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.21.7e-0776110140
                                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtae 40 
                                           s+y+GV+ +k  grW+A+   +     +k+++lg f++ e
  cra_locus_16828_iso_5_len_1570_ver_3  76 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDS-E 110
                                           89********.7******5553..2.26*********9.6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.993141IPR001471AP2/ERF domain
SMARTSM003803.4E-5547IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-9941IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-7943IPR016177DNA-binding domain
SuperFamilySSF541718.5E-776111IPR016177DNA-binding domain
SMARTSM003802.4E-477129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MCLIAFVWVS LGGFDTAHAA ARAYDRAAIK FRGVDADINF NISDYEDDMK QMQNLTKEEF  60
VHILRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK YIYLGLFDSE KRLQGPNDHE  120
LLLLILNLLP CILNLNRVPT NSSLPFDFLQ PGLMIKRLSN VTEGRLXPIL SPVPMTQKSF  180
MIPKMKVYVS FLYILVVYAN EIKLTQKKPL ILENAGNQHD LDLNLGISNS SAKDNGSSRG  240
VQYHPYDMQS GRTSKIDNSS AALNNPPLKG LPLVSEHPHV WTGVFPHFVH SYKEQLTENK  300
TEVGSSQGPP KWAWQMQTQF STTPVTVFPS AASSGFSSPV TTTALSASSP LLKAPNPSAL  360
NLCFASCNSS STSIPHSYHQ LRLQQPPP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2H5NDJ02e-91A0A2H5NDJ0_CITUN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116