PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_16789_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB | ||||||||
Protein Properties | Length: 396aa MW: 43726.4 Da PI: 7.0532 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 8.2e-18 | 53 | 100 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell++++k+ G g+W+t +++ g+ R++k+c++rw +yl cra_locus_16789_iso_1_len_1282_ver_3 53 RGPWTPEEDELLANYIKREGEGRWRTLPKKAGLLRCGKSCRLRWMNYL 100 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46.3 | 9.5e-15 | 111 | 151 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l cra_locus_16789_iso_1_len_1282_ver_3 111 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 151 89***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-22 | 44 | 102 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.096 | 48 | 100 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.47E-28 | 50 | 147 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-13 | 52 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 53 | 100 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.39E-10 | 55 | 100 | No hit | No description |
PROSITE profile | PS51294 | 24.404 | 101 | 155 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-24 | 103 | 156 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 105 | 153 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.86E-11 | 111 | 151 | No hit | No description |
Pfam | PF00249 | 1.6E-13 | 111 | 151 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0048354 | Biological Process | mucilage biosynthetic process involved in seed coat development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MRKPSSRTTQ AAAAVGGGDG GGGASSSSAA AVAANNNNNN KVTPCCNKIG LKRGPWTPEE 60 DELLANYIKR EGEGRWRTLP KKAGLLRCGK SCRLRWMNYL RPSVKRGHIA PDEEDLILRL 120 HRLLGNRWSL IAGRIPGRTD NEIKNYWNTH LSKKLISQGI DPRTHKPLPI QQPPPPPPPP 180 ITSINSPIIQ NSNILPNQIQ VPTTSNSNYI PNNNSLLEFD QVPALNYQTC LTQLVDHENG 240 NMDNNNNISM IQNGAAAAVG VGGGAGESCY EGQISNEDDQ EQDDMNYCTN DDVFSSFLNS 300 LINEDVFNSQ NHLVQLHQQH HHQPHQQHSM INVVDQNNDH HHLISSSSSS TQAFAFGPAA 360 GWDHHHASQN MIMAANPTAA FHHHHQNDHQ VEKPHF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-25 | 51 | 155 | 5 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004295005.1 | 1e-102 | PREDICTED: transcription repressor MYB5 | ||||
TrEMBL | A0A411PZP7 | 1e-102 | A0A411PZP7_CITLI; R2R3-MYB family transcription factor | ||||
STRING | XP_004295005.1 | 1e-101 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |