PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_16767_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 25225.4 Da PI: 8.7159 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.3e-17 | 140 | 190 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp k r++lg+f+ a +Aa+a++ a+ k++g cra_locus_16767_iso_1_len_1411_ver_3 140 QYRGVRRRP-WGKYAAEIRDP---ArKGCRVWLGTFDNAVDAARAYDCAAFKMRG 190 69*******.**********8...4445*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-31 | 139 | 199 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-11 | 140 | 190 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-35 | 140 | 204 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.56E-28 | 140 | 198 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-22 | 140 | 199 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.105 | 140 | 198 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-13 | 141 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-13 | 180 | 200 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MALELIRQHL LGDFTSVDTE SFINNLNFCL NDFCDDVYER QMQVVMRAAK LEPTTSISDS 60 ESSSPGSDPK EPETPVSQYL KLENEFFEYE TKPNVVLKPI LSSGSQNSVN STITTAVTVT 120 TADPIGIEIG LSAGRRGSRQ YRGVRRRPWG KYAAEIRDPA RKGCRVWLGT FDNAVDAARA 180 YDCAAFKMRG RKAILNFPLE AGKSSPPATA CRKSRRQSRF ENAFPGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-27 | 138 | 199 | 3 | 64 | ATERF1 |
3gcc_A | 4e-27 | 138 | 199 | 3 | 64 | ATERF1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027104025.1 | 9e-76 | LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF106 | ||||
TrEMBL | Q84XB0 | 9e-63 | Q84XB0_SOLLC; Ethylene response factor 4 | ||||
STRING | Solyc05g052030.1.1 | 1e-63 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |