PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_1670_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 357aa MW: 39389.5 Da PI: 7.9867

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1670_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.7	5.1e-14	111	162	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A+e++k+L+ cra_locus_1670_iso_4_len_1723_ver_3 111 QRMTHIAVERNRRKQMNEHLSVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 162 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.83E-16	109	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.6E-14	109	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.13E-12	109	166	No hit	No description
PROSITE profile	PS50888	15.389	110	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-11	111	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-9	116	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MALEALSSNE LLNFIIYDTT ISTSTPPPPP PHSSSNSLTN FLFDNNLDHQ QQQQLNNSIS 60 DSMPPVLRRS PEATAAALRH QNNQLDAAVQ GRKKRRRRQR VCKNKEEAEN QRMTHIAVER 120 NRRKQMNEHL SVLRSLMPES YVQRGDQASI VGGAIEFVKE LEHHLQCLEA QKFTLLQQDT 180 TTTATTAAAT NKFLPPPPTN TTTPFAQFFT YPQYTCSSSS TANCSQIPNN HKYTSKSKAA 240 IADIEVTLIE THANVRILSR RRFRQISKLV TGFQTLYLTI LHLNVTTLDP LVLYSISAKV 300 EEGCVLNSAD DIAGAVHHIL GIIEEEANLG SLCGQDSSSS CCLVGGGGGL PPPPRTC

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MALEALSSNE LLNFIIYDTT ISTSTPPPPP PHSSSNSLTN FLFDNNLDHQ QQQQLNNSIS  60
DSMPPVLRRS PEATAAALRH QNNQLDAAVQ GRKKRRRRQR VCKNKEEAEN QRMTHIAVER  120
NRRKQMNEHL SVLRSLMPES YVQRGDQASI VGGAIEFVKE LEHHLQCLEA QKFTLLQQDT  180
TTTATTAAAT NKFLPPPPTN TTTPFAQFFT YPQYTCSSSS TANCSQIPNN HKYTSKSKAA  240
IADIEVTLIE THANVRILSR RRFRQISKLV TGFQTLYLTI LHLNVTTLDP LVLYSISAKV  300
EEGCVLNSAD DIAGAVHHIL GIIEEEANLG SLCGQDSSSS CCLVGGGGGL PPPPRTC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	98	GRKKRRRRQ
2	91	97	RKKRRRR
3	92	97	KKRRRR
4	111	122	RMTHIAVERNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027080303.1	1e-135	transcription factor bHLH71-like isoform X1
Refseq	XP_027084006.1	1e-135	transcription factor bHLH71-like isoform X1
Swissprot	Q9C7T4	1e-71	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A068UXQ6	1e-133	A0A068UXQ6_COFCA; Uncharacterized protein
STRING	XP_009631535.1	1e-129	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]