PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_16657_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family AP2
Protein Properties Length: 535aa    MW: 58801.7 Da    PI: 6.8201
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_16657_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.44.6e-15247306155
                                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                           s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  cra_locus_16657_iso_2_len_1928_ver_3 247 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 306
                                           57*******************666664478446*************************98 PP
2AP249.79.1e-16349400155
                                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                           s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  cra_locus_16657_iso_2_len_1928_ver_3 349 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 400
                                           57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-17247315IPR016177DNA-binding domain
CDDcd000183.34E-23247316No hitNo description
PfamPF008477.3E-12247306IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-16248315IPR001471AP2/ERF domain
PROSITE profilePS5103219.44248314IPR001471AP2/ERF domain
SMARTSM003807.9E-30248320IPR001471AP2/ERF domain
PRINTSPR003672.4E-6249260IPR001471AP2/ERF domain
CDDcd000188.17E-12349410No hitNo description
PfamPF008474.7E-10349400IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18349410IPR016177DNA-binding domain
PROSITE profilePS5103219.151350408IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-18350409IPR001471AP2/ERF domain
SMARTSM003807.7E-32350414IPR001471AP2/ERF domain
PRINTSPR003672.4E-6390410IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
WLSFSLSSME MLNSSSSQPQ IAPLFDASAA AASSAHHHNS HHHHYYFSDN FYGGNNGWQK  60
GHHQIMYTGD ENHQVKQQVV TEEQSNMNGG GVHHHDHSSI FTSFLDQNQP PPKLEDFLGG  120
DSTETQDSSL THIYDQQQGG SAYFGDQQDL KTIAAFQAFS TNSGSEVDDS ASVARTTTTQ  180
VMCGGAEFTT GQSNESGNEL GYSQCPPTAG ALSLCVNPQR SSDQKAIVPV DSDACKKITD  240
TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR QVYLGGYDKE EKAARAYDLA  300
ALKYWGPTAT TNFPVTNYSK EVEEMKHVTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ  360
GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAAIKFRG VNAVTNFEMS RYDVEAIMKS  420
ALPIGGAAKR LKLSLESEQK PTLSNDQQTQ CSSSNGSSST INFSAIQPAP PVPCGVPFDS  480
ATPYYHHNLF HHLNVSNNAA VVATPGTTGP VSSLMTPMPL LPSPAEFFIW PHQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027179591.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-166AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A068U1U00.0A0A068U1U0_COFCA; Uncharacterized protein
STRINGXP_009603183.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]