PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_16651_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family AP2
Protein Properties Length: 404aa    MW: 44238.5 Da    PI: 6.799
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_16651_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.73.8e-1572123155
                                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                           s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  cra_locus_16651_iso_1_len_1474_ver_3  72 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 123
                                           57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.576137IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-10139IPR016177DNA-binding domain
SMARTSM003801.4E-6143IPR001471AP2/ERF domain
CDDcd000181.54E-13139No hitNo description
Gene3DG3DSA:3.30.730.101.2E-10239IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-1872133IPR016177DNA-binding domain
PfamPF008474.7E-1072123IPR001471AP2/ERF domain
CDDcd000189.88E-2672133No hitNo description
PROSITE profilePS5103219.17773131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-1873131IPR001471AP2/ERF domain
SMARTSM003801.4E-3373137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
KGRQVYLGGY DKEEKAARAY DLAALKYWGP TTTTNFPTSN YEKELEEMKH MTRQEYVASL  60
RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK  120
FRGLNAVTNF EISRYDVKSI LESSTLPIGA AAKRLKDAEH AAEMALDAQI RANDDNLSSH  180
LTDGISTYAP SGHHGWPSSL TFHQTLGIHY PYNTHNPPQQ RIWCKQEHDS EVTHSSFPDL  240
HHQIQMGNTH NFLQPSVLHN LMSLDSASLE HSSASNSVIY GGNGGSGSGQ ALGYGGAGGF  300
VLPMSSTVIA ADDQEGNQNQ NGYENMFGSS QHDPYNQTRN LMYYHDNSEQ SSTVKITGGG  360
GIYDQGSSCN NWVPTGVPNL GVRATSSVAV CHGAAPTFTV WNDT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023872279.10.0AP2-like ethylene-responsive transcription factor BBM1
RefseqXP_027183775.10.0AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A2I4E4460.0A0A2I4E446_JUGRE; AP2-like ethylene-responsive transcription factor BBM
STRINGEOY097221e-173(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131