PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_1664_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | GRAS | ||||||||
Protein Properties | Length: 53aa MW: 6431.14 Da PI: 7.5265 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 28.1 | 2.5e-09 | 3 | 50 | 326 | 374 |
GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++pl++++ k ak ++ +++d + ++e+s++l++gWk+r +++S+Wr cra_locus_1664_iso_2_len_829_ver_3 3 QLPLNDEILKMAKERVKAYHKD-FVIDEDSQWLLQGWKGRIFYALSSWR 50 68999***************77.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 8.6E-7 | 3 | 50 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 53 aa Download sequence Send to blast |
XEQLPLNDEI LKMAKERVKA YHKDFVIDED SQWLLQGWKG RIFYALSSWR PVY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085020.1 | 1e-23 | scarecrow-like protein 14 | ||||
Refseq | XP_011085021.1 | 1e-23 | scarecrow-like protein 14 | ||||
Refseq | XP_011085022.1 | 1e-23 | scarecrow-like protein 14 | ||||
Refseq | XP_011085023.1 | 1e-23 | scarecrow-like protein 14 | ||||
Refseq | XP_011085025.1 | 1e-23 | scarecrow-like protein 14 | ||||
Swissprot | Q9LTI5 | 1e-14 | SCL11_ARATH; Scarecrow-like protein 11 | ||||
TrEMBL | I0AZ64 | 1e-22 | I0AZ64_9ROSI; GRAS family protein (Fragment) | ||||
TrEMBL | V4SM02 | 7e-22 | V4SM02_9ROSI; Uncharacterized protein | ||||
STRING | XP_006435553.1 | 1e-22 | (Citrus clementina) |
Publications ? help Back to Top | |||
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