PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_16649_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 316aa    MW: 34459.9 Da    PI: 9.7187
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_16649_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.8e-08219259954
                                          HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                                  HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                           r+RR+ri +++  L++l+P  +      K++ a++L +A +Y+k L
  cra_locus_16649_iso_1_len_946_ver_3 219 ARQRRERISERIRVLQRLVPGgN------KMDTASMLDEAANYLKFL 259
                                          69******************955......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.015210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-14216269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-12218268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-5219259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-4232264No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
XNGLMAADYG SIGKAKAKGN AVAPAGVSKS GESLDCLLSA TNSTTETSSD DGISMIFSSS  60
ADCNKNLWNF RTANAVSSGE SASASDNSHN QIDETISQTS SANHRPKKRN YDQYFGTFQL  120
ISSENPPKIS KRAKSGKQQQ QQQQQQPPSC SNINFQLQTS DPSVSSGTIT EPDSEAIAQM  180
KEMIYRAAAF RPVNFGTEVV EKPKRKNVRI SSDPQTVAAR QRRERISERI RVLQRLVPGG  240
NKMDTASMLD EAANYLKFLR SQVKALEDLG QKSSTINSTS NSSSSSNSAT NNFPFLSLPF  300
NHSFPLQSYF PLQQFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219224RQRRER
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654570.14e-94PREDICTED: transcription factor bHLH87
RefseqXP_010654572.14e-94PREDICTED: transcription factor bHLH87
RefseqXP_019077817.14e-94PREDICTED: transcription factor bHLH87
SwissprotQ8S3D23e-68BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A438K7393e-92A0A438K739_VITVI; Transcription factor bHLH87
TrEMBLF6HY469e-93F6HY46_VITVI; Uncharacterized protein
STRINGVIT_09s0002g02700.t011e-93(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43502242
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]