PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_1635_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 329aa MW: 37329 Da PI: 4.4235 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.3 | 3.1e-19 | 92 | 145 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t eq++ Le+ Fe ++++ e++ eLAk+lgL+ rq+ +WFqNrRa++k cra_locus_1635_iso_3_len_1612_ver_3 92 KKRRLTVEQVQFLEKSFEVENKLEPERKIELAKELGLQPRQIAIWFQNRRARWK 145 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130.2 | 8.2e-42 | 91 | 183 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 ekkrrl+ eqv++LE+sFe e+kLeperK ela+eLglqprq+a+WFqnrRAR+ktkqlEkdy++L+++y++lk cra_locus_1635_iso_3_len_1612_ver_3 91 EKKRRLTVEQVQFLEKSFEVENKLEPERKIELAKELGLQPRQIAIWFQNRRARWKTKQLEKDYDVLQASYNNLK 164 69************************************************************************ PP HD-ZIP_I/II 75 eenerLekeveeLreelke 93 ++ ++L ke+++L++e+++ cra_locus_1635_iso_3_len_1612_ver_3 165 ADYDSLLKEKDKLKAEIAQ 183 **************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.27E-20 | 76 | 149 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.961 | 87 | 147 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.8E-20 | 90 | 151 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.6E-16 | 92 | 145 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.82E-19 | 92 | 148 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-20 | 94 | 154 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.3E-6 | 118 | 127 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 122 | 145 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.3E-6 | 127 | 143 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.8E-16 | 147 | 188 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MAGRTLLYGS TGVASSVNPV PIQNQIVPGS SSEPHNSIFM SASSSSFLGP RSMVSFEDVN 60 GRKRTEKSFY GPFDQEDNGD EDLDEYFRQP EKKRRLTVEQ VQFLEKSFEV ENKLEPERKI 120 ELAKELGLQP RQIAIWFQNR RARWKTKQLE KDYDVLQASY NNLKADYDSL LKEKDKLKAE 180 IAQITEKLLL KEKDNGNSKS SYGSDLSAET TKEPSADSVS EDEVSKISAL AYKHEDHSSA 240 KSDVLDSDSP RYTDGVQSSL LERGDSSYIF EPDQSDLSQD EEDDISKNLL RPSYVFPKIE 300 DDCYSDPPSS SYFGFPVEDQ SFGCFWPYN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 147 | RRARWKTKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028088415.1 | 1e-146 | homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | A0A2R6QGY7 | 1e-143 | A0A2R6QGY7_ACTCH; Homeobox-leucine zipper protein | ||||
STRING | POPTR_0015s07640.1 | 1e-141 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA825 | 24 | 95 |