PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1635_iso_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 329aa    MW: 37329 Da    PI: 4.4235
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1635_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33.1e-1992145356
                                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                          k++++t eq++ Le+ Fe ++++  e++ eLAk+lgL+ rq+ +WFqNrRa++k
  cra_locus_1635_iso_3_len_1612_ver_3  92 KKRRLTVEQVQFLEKSFEVENKLEPERKIELAKELGLQPRQIAIWFQNRRARWK 145
                                          56789************************************************9 PP

2HD-ZIP_I/II130.28.2e-4291183193
                          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 
                                          ekkrrl+ eqv++LE+sFe e+kLeperK ela+eLglqprq+a+WFqnrRAR+ktkqlEkdy++L+++y++lk
  cra_locus_1635_iso_3_len_1612_ver_3  91 EKKRRLTVEQVQFLEKSFEVENKLEPERKIELAKELGLQPRQIAIWFQNRRARWKTKQLEKDYDVLQASYNNLK 164
                                          69************************************************************************ PP

                          HD-ZIP_I/II  75 eenerLekeveeLreelke 93 
                                          ++ ++L ke+++L++e+++
  cra_locus_1635_iso_3_len_1612_ver_3 165 ADYDSLLKEKDKLKAEIAQ 183
                                          **************99975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.27E-2076149IPR009057Homeodomain-like
PROSITE profilePS5007117.96187147IPR001356Homeobox domain
SMARTSM003893.8E-2090151IPR001356Homeobox domain
PfamPF000461.6E-1692145IPR001356Homeobox domain
CDDcd000863.82E-1992148No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2094154IPR009057Homeodomain-like
PRINTSPR000313.3E-6118127IPR000047Helix-turn-helix motif
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PRINTSPR000313.3E-6127143IPR000047Helix-turn-helix motif
PfamPF021831.8E-16147188IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAGRTLLYGS TGVASSVNPV PIQNQIVPGS SSEPHNSIFM SASSSSFLGP RSMVSFEDVN  60
GRKRTEKSFY GPFDQEDNGD EDLDEYFRQP EKKRRLTVEQ VQFLEKSFEV ENKLEPERKI  120
ELAKELGLQP RQIAIWFQNR RARWKTKQLE KDYDVLQASY NNLKADYDSL LKEKDKLKAE  180
IAQITEKLLL KEKDNGNSKS SYGSDLSAET TKEPSADSVS EDEVSKISAL AYKHEDHSSA  240
KSDVLDSDSP RYTDGVQSSL LERGDSSYIF EPDQSDLSQD EEDDISKNLL RPSYVFPKIE  300
DDCYSDPPSS SYFGFPVEDQ SFGCFWPYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARWKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028088415.11e-146homeobox-leucine zipper protein HAT5-like
TrEMBLA0A2R6QGY71e-143A0A2R6QGY7_ACTCH; Homeobox-leucine zipper protein
STRINGPOPTR_0015s07640.11e-141(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495