PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_1635_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 202aa MW: 23320.1 Da PI: 7.5098 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.4 | 1.4e-19 | 92 | 145 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t eq++ Le+ Fe ++++ e++ eLAk+lgL+ rq+ +WFqNrRa++k cra_locus_1635_iso_2_len_940_ver_3 92 KKRRLTVEQVQFLEKSFEVENKLEPERKIELAKELGLQPRQIAIWFQNRRARWK 145 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131.8 | 2.7e-42 | 91 | 182 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalke 75 ekkrrl+ eqv++LE+sFe e+kLeperK ela+eLglqprq+a+WFqnrRAR+ktkqlEkdy++L+++y++lk+ cra_locus_1635_iso_2_len_940_ver_3 91 EKKRRLTVEQVQFLEKSFEVENKLEPERKIELAKELGLQPRQIAIWFQNRRARWKTKQLEKDYDVLQASYNNLKA 165 69************************************************************************* PP HD-ZIP_I/II 76 enerLekeveeLreelk 92 + ++L ke+++L++e+ cra_locus_1635_iso_2_len_940_ver_3 166 DYDSLLKEKDKLKAEVI 182 *************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.75E-20 | 76 | 149 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.961 | 87 | 147 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.8E-20 | 90 | 151 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.9E-17 | 92 | 145 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.13E-18 | 92 | 148 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-21 | 93 | 154 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.5E-6 | 118 | 127 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 122 | 145 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.5E-6 | 127 | 143 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.6E-16 | 147 | 182 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MAGRTLLYGS TGVASSVNPV PIQNQIVPGS SSEPHNSIFM SASSSSFLGP RSMVSFEDVN 60 GRKRTEKSFY GPFDQEDNGD EDLDEYFRQP EKKRRLTVEQ VQFLEKSFEV ENKLEPERKI 120 ELAKELGLQP RQIAIWFQNR RARWKTKQLE KDYDVLQASY NNLKADYDSL LKEKDKLKAE 180 VISSPFLNFV ISFPRNIVIW LX |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 147 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028088415.1 | 1e-83 | homeobox-leucine zipper protein HAT5-like | ||||
Swissprot | Q02283 | 8e-44 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A2R6QGY7 | 3e-87 | A0A2R6QGY7_ACTCH; Homeobox-leucine zipper protein | ||||
STRING | POPTR_0015s07640.1 | 1e-82 | (Populus trichocarpa) |
Publications ? help Back to Top | |||
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