PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1635_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 277aa    MW: 32038.1 Da    PI: 4.3429
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1635_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.4e-194093356
                                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                         k++++t eq++ Le+ Fe ++++  e++ eLAk+lgL+ rq+ +WFqNrRa++k
  cra_locus_1635_iso_1_len_1205_ver_3 40 KKRRLTVEQVQFLEKSFEVENKLEPERKIELAKELGLQPRQIAIWFQNRRARWK 93
                                         56789************************************************9 PP
2HD-ZIP_I/II130.75.8e-4239131193
                          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 
                                          ekkrrl+ eqv++LE+sFe e+kLeperK ela+eLglqprq+a+WFqnrRAR+ktkqlEkdy++L+++y++lk
  cra_locus_1635_iso_1_len_1205_ver_3  39 EKKRRLTVEQVQFLEKSFEVENKLEPERKIELAKELGLQPRQIAIWFQNRRARWKTKQLEKDYDVLQASYNNLK 112
                                          69************************************************************************ PP

                          HD-ZIP_I/II  75 eenerLekeveeLreelke 93 
                                          ++ ++L ke+++L++e+++
  cra_locus_1635_iso_1_len_1205_ver_3 113 ADYDSLLKEKDKLKAEIAQ 131
                                          **************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.41E-202597IPR009057Homeodomain-like
PROSITE profilePS5007117.9613595IPR001356Homeobox domain
SMARTSM003893.8E-203899IPR001356Homeobox domain
PfamPF000461.2E-164093IPR001356Homeobox domain
CDDcd000861.16E-184096No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2042102IPR009057Homeodomain-like
PRINTSPR000312.5E-66675IPR000047Helix-turn-helix motif
PROSITE patternPS0002707093IPR017970Homeobox, conserved site
PRINTSPR000312.5E-67591IPR000047Helix-turn-helix motif
PfamPF021831.4E-1695136IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MVSFEDVNGR KRTEKSFYGP FDQEDNGDED LDEYFRQPEK KRRLTVEQVQ FLEKSFEVEN  60
KLEPERKIEL AKELGLQPRQ IAIWFQNRRA RWKTKQLEKD YDVLQASYNN LKADYDSLLK  120
EKDKLKAEIA QITEKLLLKE KDNGNSKSSY GSDLSAETTK EPSADSVSED EVSKISALAY  180
KHEDHSSAKS DVLDSDSPRY TDGVQSSLLE RGDSSYIFEP DQSDLSQDEE DDISKNLLRP  240
SYVFPKIEDD CYSDPPSSSY FGFPVEDQSF GCFWPYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18795RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027125743.11e-133homeobox-leucine zipper protein HAT5-like
RefseqXP_027167386.11e-133homeobox-leucine zipper protein HAT5-like
SwissprotQ022839e-49HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A068V4R41e-131A0A068V4R4_COFCA; Uncharacterized protein
STRINGEOY217131e-130(Theobroma cacao)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]