PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_16332_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 270aa MW: 30126.4 Da PI: 9.4938

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_16332_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	70.9	3.3e-22	3	58	72	128
NAM 72 krknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 r+nr++ sgyWkatg+dk +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl cra_locus_16332_iso_3_len_1621_ver_3 3 XRPNRVAGSGYWKATGTDKIITT-EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 58 699**************9999.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	32.596	1	81	IPR003441	NAC domain
SuperFamily	SSF101941	5.62E-31	3	82	IPR003441	NAC domain
Pfam	PF02365	4.1E-10	5	58	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MDXRPNRVAG SGYWKATGTD KIITTEGRKV GIKKALVFYV GKAPKGTKTN WIMHEYRLSE 60 PPRKNGSARL DDWVLCRIYK KNSGGAAKQL SGVNSKEYSH GSSSSSSSQF DDMLESLPEI 120 DDRFFSLPRM NSLKTLHQDQ KINLQTLGPG SIDWATLAGL SSVPELLPVG QNQAHQIHQA 180 GQGNVNPNDV VSGHRDMFVP SFQQMCHVDE EVQSGLRTHN RVDNSGFLQP PPQQQQQQQH 240 SSNLMSFHQN SIDPYGIRYP TQMGNVGYRQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-46	4	83	88	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-46	4	83	88	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-46	4	83	88	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-46	4	83	88	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-46	4	83	91	170	NAC domain-containing protein 19
3swm_B	2e-46	4	83	91	170	NAC domain-containing protein 19
3swm_C	2e-46	4	83	91	170	NAC domain-containing protein 19
3swm_D	2e-46	4	83	91	170	NAC domain-containing protein 19
3swp_A	2e-46	4	83	91	170	NAC domain-containing protein 19
3swp_B	2e-46	4	83	91	170	NAC domain-containing protein 19
3swp_C	2e-46	4	83	91	170	NAC domain-containing protein 19
3swp_D	2e-46	4	83	91	170	NAC domain-containing protein 19
4dul_A	2e-46	4	83	88	167	NAC domain-containing protein 19
4dul_B	2e-46	4	83	88	167	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419, ECO:0000269\|PubMed:30610166}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027063418.1	1e-113	NAC domain-containing protein 72-like
Swissprot	A0A3Q7HH64	5e-92	JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBL	A0A2U9IY23	0.0	A0A2U9IY23_CATRO; NAC domain containing protein 055
STRING	EOY12855	1e-105	(Theobroma cacao)

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419] Liu Y, et al. MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop. Plant Cell, 2019. 31(1): p. 106-127 [PMID:30610166]