PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_16251_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 166aa MW: 17516 Da PI: 7.6918 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.5e-17 | 57 | 102 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v ++G ++W +Iar ++ gR++k+c++rw + cra_locus_16251_iso_1_len_925_ver_3 57 KGPWSPEEDVMLSRLVSKFGARNWGLIARGIP-GRSGKSCRLRWCNQ 102 79******************************.***********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.775 | 52 | 107 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-17 | 53 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-15 | 56 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.5E-17 | 57 | 102 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-21 | 58 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.99E-15 | 59 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MAEVAVENGA KAIDAVVDDG EQVVVDAAVD GGSGAEMLVE GYGNDGGAEG SGKGRVKGPW 60 SPEEDVMLSR LVSKFGARNW GLIARGIPGR SGKSCRLRWC NQLDPGVKHK PFSGKFCCLF 120 NLGSLSPFFR SNASFCADTL FVKSNVCALK QFFLSAFSSG CILVNV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-15 | 56 | 108 | 6 | 58 | B-MYB |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024935245.1 | 7e-35 | LOW QUALITY PROTEIN: transcription factor MYB1-like | ||||
TrEMBL | A0A2R6RWV3 | 9e-35 | A0A2R6RWV3_ACTCH; Transcription factor like | ||||
STRING | EOY07337 | 1e-32 | (Theobroma cacao) |