PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_16124_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 471aa MW: 51381.4 Da PI: 7.4978

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_16124_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.4	6.8e-05	343	381	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq cra_locus_16124_iso_1_len_1524_ver_3 343 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 381 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.312	331	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-10	341	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.37E-5	341	385	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.5E-9	345	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MESAKKHSHS LQDHHLLLLP SSSSSFSSSS TLDSSSSYGT AAANGSSHLY WTPFHNILNC 60 GSSSLGGSSR NYSSSNMTPH DHDLMSFDQW AESAGNNSPN FTNNLQPPSS SSPHDLQQLS 120 QIKQELSAAE SNNNNNNNYS SLRFTDHHQM ISSPSISSTI DQDQQQRDDD INVKLLLRTL 180 SSSCPNQDFY SSSPSPSPPS PFMRGGTLSH IYPTVNVSSN IRPTSTNNFD MNLEALDLFN 240 SAGFGGEGLR QSLMQDHQLG LSTSSGLSYN NGGLDYDNYM KQSIHHERSF INSTNMTPNF 300 SNGVAEAKLR SSVTNLETVK APQPAAKRSR LDSRPSCPPF KVRKEKLGDR IAALQQLVAP 360 FGKTDTASVL MEAIGYIKFL QSQVETLSVP YLKSSRNNNN NKTQRAHVQG NMQGGPAAEI 420 NGSHNNNNNN KEERKRDLRS RGLCLVPLSC LSYMTDTGGA VWPPPNFPGG T

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MESAKKHSHS LQDHHLLLLP SSSSSFSSSS TLDSSSSYGT AAANGSSHLY WTPFHNILNC  60
GSSSLGGSSR NYSSSNMTPH DHDLMSFDQW AESAGNNSPN FTNNLQPPSS SSPHDLQQLS  120
QIKQELSAAE SNNNNNNNYS SLRFTDHHQM ISSPSISSTI DQDQQQRDDD INVKLLLRTL  180
SSSCPNQDFY SSSPSPSPPS PFMRGGTLSH IYPTVNVSSN IRPTSTNNFD MNLEALDLFN  240
SAGFGGEGLR QSLMQDHQLG LSTSSGLSYN NGGLDYDNYM KQSIHHERSF INSTNMTPNF  300
SNGVAEAKLR SSVTNLETVK APQPAAKRSR LDSRPSCPPF KVRKEKLGDR IAALQQLVAP  360
FGKTDTASVL MEAIGYIKFL QSQVETLSVP YLKSSRNNNN NKTQRAHVQG NMQGGPAAEI  420
NGSHNNNNNN KEERKRDLRS RGLCLVPLSC LSYMTDTGGA VWPPPNFPGG T

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027094752.1	9e-90	transcription factor bHLH110-like isoform X1
Refseq	XP_027094753.1	8e-90	transcription factor bHLH110-like isoform X2
TrEMBL	A0A068UFY4	4e-89	A0A068UFY4_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7533	22	27