PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_16080_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 422aa MW: 45095.9 Da PI: 6.7146 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.5 | 1e-17 | 233 | 287 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k cra_locus_16080_iso_2_len_1703_ver_3 233 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 287 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.2 | 7.3e-41 | 233 | 322 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydal 73 +kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l cra_locus_16080_iso_2_len_1703_ver_3 233 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETL 305 69*********************************************************************** PP HD-ZIP_I/II 74 keenerLekeveeLreel 91 +een+rL+ke +eLr +l cra_locus_16080_iso_2_len_1703_ver_3 306 TEENRRLHKELAELR-AL 322 **************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-17 | 220 | 287 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.05E-18 | 225 | 290 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.151 | 229 | 289 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.7E-16 | 231 | 293 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.65E-17 | 233 | 290 | No hit | No description |
Pfam | PF00046 | 3.9E-15 | 233 | 287 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 264 | 287 | IPR017970 | Homeobox, conserved site |
CDD | cd14686 | 0.00452 | 280 | 321 | No hit | No description |
SMART | SM00340 | 2.0E-25 | 289 | 332 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.3E-10 | 289 | 323 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MELGLSLGDH GTSTSTPAAA SKLPFGLLSE QEQDQSRKNN KKITSTSSGL GFCMALGIGG 60 HSINHQKSIE INEAAADDDN TSSSSSEEES DEQIRSGDSV DTETPPLQLD LLPLAPVIPS 120 NNTPRTRSLR CSSDNGSSEN GSSGNGGLAA ARGFDVNRLP AGGDEVSSPN NSMASSFQMD 180 FTIFRGGSTG SNAAALARSG NKRDSAAAVA GGNDAVAGER GSDDDENGLN SSRKKLRLSK 240 EQSAYLEESF KEHNTLNPKQ KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR 300 CCETLTEENR RLHKELAELR ALKTSNPFYM QLPPTTLTMC PSCERTTVAT TTTSTPPPTI 360 AIPSSTSPAV AVAVTPATTT SATDDSIPKA IPYPPALPRP RLMYGRPFSH NQNHPPNHSA 420 PS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 231 | 237 | SRKKLRL |
2 | 281 | 289 | RRARTKLKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009617361.1 | 1e-128 | PREDICTED: homeobox-leucine zipper protein HOX11-like | ||||
Refseq | XP_016500773.1 | 1e-128 | PREDICTED: homeobox-leucine zipper protein HOX11-like | ||||
TrEMBL | A0A2G9I609 | 1e-128 | A0A2G9I609_9LAMI; Transcription factor HEX | ||||
STRING | XP_009617361.1 | 1e-128 | (Nicotiana tomentosiformis) |