PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_16080_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 422aa    MW: 45095.9 Da    PI: 6.7146
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_16080_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.51e-17233287256
                                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                           rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  cra_locus_16080_iso_2_len_1703_ver_3 233 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 287
                                           788899***********************************************98 PP

2HD-ZIP_I/II127.27.3e-41233322191
                           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydal 73 
                                           +kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l
  cra_locus_16080_iso_2_len_1703_ver_3 233 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETL 305
                                           69*********************************************************************** PP

                           HD-ZIP_I/II  74 keenerLekeveeLreel 91 
                                           +een+rL+ke +eLr +l
  cra_locus_16080_iso_2_len_1703_ver_3 306 TEENRRLHKELAELR-AL 322
                                           **************9.55 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-17220287IPR009057Homeodomain-like
SuperFamilySSF466892.05E-18225290IPR009057Homeodomain-like
PROSITE profilePS5007117.151229289IPR001356Homeobox domain
SMARTSM003899.7E-16231293IPR001356Homeobox domain
CDDcd000869.65E-17233290No hitNo description
PfamPF000463.9E-15233287IPR001356Homeobox domain
PROSITE patternPS000270264287IPR017970Homeobox, conserved site
CDDcd146860.00452280321No hitNo description
SMARTSM003402.0E-25289332IPR003106Leucine zipper, homeobox-associated
PfamPF021831.3E-10289323IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MELGLSLGDH GTSTSTPAAA SKLPFGLLSE QEQDQSRKNN KKITSTSSGL GFCMALGIGG  60
HSINHQKSIE INEAAADDDN TSSSSSEEES DEQIRSGDSV DTETPPLQLD LLPLAPVIPS  120
NNTPRTRSLR CSSDNGSSEN GSSGNGGLAA ARGFDVNRLP AGGDEVSSPN NSMASSFQMD  180
FTIFRGGSTG SNAAALARSG NKRDSAAAVA GGNDAVAGER GSDDDENGLN SSRKKLRLSK  240
EQSAYLEESF KEHNTLNPKQ KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR  300
CCETLTEENR RLHKELAELR ALKTSNPFYM QLPPTTLTMC PSCERTTVAT TTTSTPPPTI  360
AIPSSTSPAV AVAVTPATTT SATDDSIPKA IPYPPALPRP RLMYGRPFSH NQNHPPNHSA  420
PS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231237SRKKLRL
2281289RRARTKLKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617361.11e-128PREDICTED: homeobox-leucine zipper protein HOX11-like
RefseqXP_016500773.11e-128PREDICTED: homeobox-leucine zipper protein HOX11-like
TrEMBLA0A2G9I6091e-128A0A2G9I609_9LAMI; Transcription factor HEX
STRINGXP_009617361.11e-128(Nicotiana tomentosiformis)