PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_16080_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 448aa    MW: 48113.2 Da    PI: 6.9224
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_16080_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.63.7e-17233285254
                                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                           rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+
  cra_locus_16080_iso_1_len_1780_ver_3 233 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRAR 285
                                           788899**********************************************8 PP
2HD-ZIP_I/II85.76.2e-28233294162
                           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkd 62 
                                           +kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRAR+ t+ l + 
  cra_locus_16080_iso_1_len_1780_ver_3 233 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARFVTRLLSSR 294
                                           69****************************************************99987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-17219283IPR009057Homeodomain-like
SuperFamilySSF466893.98E-17225286IPR009057Homeodomain-like
PROSITE profilePS5007116.52229289IPR001356Homeobox domain
SMARTSM003891.0E-14231293IPR001356Homeobox domain
CDDcd000865.44E-16233285No hitNo description
PfamPF000461.4E-14233285IPR001356Homeobox domain
PfamPF021831.4E-10315349IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.0E-25315358IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MELGLSLGDH GTSTSTPAAA SKLPFGLLSE QEQDQSRKNN KKITSTSSGL GFCMALGIGG  60
HSINHQKSIE INEAAADDDN TSSSSSEEES DEQIRSGDSV DTETPPLQLD LLPLAPVIPS  120
NNTPRTRSLR CSSDNGSSEN GSSGNGGLAA ARGFDVNRLP AGGDEVSSPN NSMASSFQMD  180
FTIFRGGSTG SNAAALARSG NKRDSAAAVA GGNDAVAGER GSDDDENGLN SSRKKLRLSK  240
EQSAYLEESF KEHNTLNPKQ KLALAKQLNL RPRQVEVWFQ NRRARFVTRL LSSRFSLACF  300
VLEIDNXIIC RTKLKQTEVD CEYLKRCCET LTEENRRLHK ELAELRALKT SNPFYMQLPP  360
TTLTMCPSCE RTTVATTTTS TPPPTIAIPS STSPAVAVAV TPATTTSATD DSIPKAIPYP  420
PALPRPRLMY GRPFSHNQNH PPNHSAPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231237SRKKLRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617361.11e-122PREDICTED: homeobox-leucine zipper protein HOX11-like
RefseqXP_016500773.11e-122PREDICTED: homeobox-leucine zipper protein HOX11-like
TrEMBLA0A2G9I6091e-121A0A2G9I609_9LAMI; Transcription factor HEX
STRINGXP_009617361.11e-121(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186