PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_16027_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family AP2
Protein Properties Length: 358aa    MW: 40387.2 Da    PI: 7.9859
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_16027_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.51.1e-1551110155
                                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                           s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g
  cra_locus_16027_iso_1_len_1313_ver_3  51 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 110
                                           57*******************999955656446*************************98 PP
2AP251.23e-16153204155
                                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                           s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  cra_locus_16027_iso_1_len_1313_ver_3 153 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 204
                                           89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.7E-1251110IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-1751120IPR016177DNA-binding domain
CDDcd000188.40E-1151120No hitNo description
PROSITE profilePS5103220.11252118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-1652119IPR001471AP2/ERF domain
SMARTSM003803.6E-2752124IPR001471AP2/ERF domain
PRINTSPR003674.1E-65364IPR001471AP2/ERF domain
PfamPF008475.6E-12153204IPR001471AP2/ERF domain
CDDcd000182.67E-23153214No hitNo description
SuperFamilySSF541711.05E-17153214IPR016177DNA-binding domain
PROSITE profilePS5103218.334154212IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17154213IPR001471AP2/ERF domain
SMARTSM003801.2E-24154218IPR001471AP2/ERF domain
PRINTSPR003674.1E-6194214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAKTSKQTQK NSSNNIDKSK SSSSSKNGSV TKPTKRTRKS VPRESPQQRS SIYRGVTRHR  60
WTGRYEAHLW DKNCWNESQN KKGRQVYLGA YDDEEAAAHA YDLAALKYWG QETILNFPVS  120
TYEKEVQEME GQSKEEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL  180
YLGTYATQEE AATAYDMAAI EYRGLNAVTN FDLSRYIKWL RPNQTTTDHN NTNPNPNPNP  240
EPSSSSPNPI KEIVGLNFLH DQQQQSSSSG ETGTETAGRS SSALGLLLQS SKFKEMLERT  300
SSVADSPPSE VEPPRRSFPD DIQTYFDCND SGRFCDDDDH DNIFGDLASA MFPCELDS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051280.11e-179AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
RefseqXP_028051281.11e-179AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN41e-118AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1S4B4H31e-172A0A1S4B4H3_TOBAC; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1U7UX981e-172A0A1U7UX98_NICSY; AP2-like ethylene-responsive transcription factor At1g16060
STRINGXP_009757386.11e-173(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]