PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_16012_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 531aa MW: 58923.3 Da PI: 10.6756

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_16012_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.8	4.9e-08	43	80	1	41
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 ++rW t+E+++l av ++G+ +W+ +a+++ Rtl c cra_locus_16012_iso_3_len_1818_ver_3 43 KKRWGTWEELILGGAVLRHGTQNWNVVASELR-SRTL--CS 80 68******************************.9998..54 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00249	6.0E-6	43	80	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-4	43	80	IPR009057	Homeodomain-like
SMART	SM00297	9.2E-16	124	406	IPR001487	Bromodomain
SuperFamily	SSF47370	6.54E-18	303	406	IPR001487	Bromodomain
Gene3D	G3DSA:1.20.920.10	2.1E-14	308	407	IPR001487	Bromodomain
Pfam	PF00439	1.7E-10	312	390	IPR001487	Bromodomain
PROSITE profile	PS50014	10.015	317	387	IPR001487	Bromodomain
CDD	cd04369	4.00E-7	319	401	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
XKVGEGGGNL VCSFVPXEVE LFDRGRTRGR REMGTDAMVV EPKKRWGTWE ELILGGAVLR 60 HGTQNWNVVA SELRSRTLCS LYFTPEVCKA KYEDLRKRYS GCTAWFEELR KRRVAELKRA 120 LEKSEDSIGS LESKIESLKT EKRHSNQVHC GSSQTESPAP LVRSDGTDSF GKETSKDGLS 180 AGSFTQDART NWSPDGQNPA VASSPKTSVK PEVSQISDGE KDLTRNEPAE PSNIQGGALR 240 KRRGKRKRKL CNTVGKEASV GESDNLGSTD IFSNSRSKET STSDCDQTIK FSSRDSPNAG 300 SCQIRSDNLM GIFDSVAENK VALVFRHRLD SQKRARYKKI IKQHLDFNLI RSRIASCTIK 360 SSKELFRDLL LLANNALVFY SKRTREYKSA MALRDIVLKE YRQHFRSSNN TATSACLPMR 420 SMYNPPVRPR SARPRPSKHS GPPAKVRQTE DDIAASPHGF LRRIDLVANV PLQSLLLPKK 480 SPKHPAKIKS GSGDGKEGLK RPAAKVKNLS AARPQAKSSP GLKDKKGGRQ S

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

XKVGEGGGNL VCSFVPXEVE LFDRGRTRGR REMGTDAMVV EPKKRWGTWE ELILGGAVLR  60
HGTQNWNVVA SELRSRTLCS LYFTPEVCKA KYEDLRKRYS GCTAWFEELR KRRVAELKRA  120
LEKSEDSIGS LESKIESLKT EKRHSNQVHC GSSQTESPAP LVRSDGTDSF GKETSKDGLS  180
AGSFTQDART NWSPDGQNPA VASSPKTSVK PEVSQISDGE KDLTRNEPAE PSNIQGGALR  240
KRRGKRKRKL CNTVGKEASV GESDNLGSTD IFSNSRSKET STSDCDQTIK FSSRDSPNAG  300
SCQIRSDNLM GIFDSVAENK VALVFRHRLD SQKRARYKKI IKQHLDFNLI RSRIASCTIK  360
SSKELFRDLL LLANNALVFY SKRTREYKSA MALRDIVLKE YRQHFRSSNN TATSACLPMR  420
SMYNPPVRPR SARPRPSKHS GPPAKVRQTE DDIAASPHGF LRRIDLVANV PLQSLLLPKK  480
SPKHPAKIKS GSGDGKEGLK RPAAKVKNLS AARPQAKSSP GLKDKKGGRQ S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	32	GRTRGRREM
2	95	112	RKRYSGCTAWFEELRKRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027161261.1	0.0	uncharacterized protein LOC113762153 isoform X2
TrEMBL	A0A068TUA5	0.0	A0A068TUA5_COFCA; Uncharacterized protein
STRING	XP_009778975.1	1e-155	(Nicotiana sylvestris)