PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_15967_iso_2

Common Name

MYC5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 321aa MW: 35433.4 Da PI: 5.1951

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_15967_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.9	5.5e-16	150	196	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq cra_locus_15967_iso_2_len_1371_ver_3 150 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 196 6***********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-20	143	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.9E-20	143	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.86	146	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.74E-17	149	200	No hit	No description
Pfam	PF00010	1.9E-13	150	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-18	152	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0009409	Biological Process	response to cold
GO:0010114	Biological Process	response to red light
GO:0010154	Biological Process	fruit development
GO:0010187	Biological Process	negative regulation of seed germination
GO:0048440	Biological Process	carpel development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MANMHGGPNR SSTSSSSVPT DLDDFSLFLH QIMLRSSSTS SSVPKANDGQ SFGFGPTNNL 60 QPDQDIRFSV PTRIPLSGSC VGFTSGSGAW LPGETAVNNV SSSSMNSVDN NELNEYDCES 120 EEGLEGLILE APAKPTTSRN PSKRSRAAEV HNLSEKRRRS RINEKMKALQ NLIPNSNKTD 180 KASMLDEAIE YLKQLQLQVQ MLTMRNGVSL YPVCLPGVLQ PNEISHMRMG YHEGNRSLNE 240 NMARPIPLDH TNPTTNMLFT VPDHYPTQDQ TSVDNLRKLN DADTLELETT PQVHPQARSF 300 QLPPPVCSEV SQYDDNGKTE Q

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00035	PBM	Transfer from AT4G36930	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028056424.1	7e-79	transcription factor SPATULA-like
TrEMBL	C7SBB8	0.0	C7SBB8_CATRO; BHLH transcription factor MYC5
STRING	XP_008241478.1	6e-70	(Prunus mume)
STRING	EMJ05761	7e-71	(Prunus persica)
STRING	XP_010093617.1	5e-70	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9850	22	27

Publications ? help Back to Top
Zhang H, et al. The basic helix-loop-helix transcription factor CrMYC2 controls the jasmonate-responsive expression of the ORCA genes that regulate alkaloid biosynthesis in Catharanthus roseus. Plant J., 2011. 67(1): p. 61-71 [PMID:21401746]