PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_15848_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YC

Protein Properties

Length: 242aa MW: 26131.3 Da PI: 4.8601

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_15848_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	178.4	6.6e-56	33	137	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenk 70 ql+ fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenk cra_locus_15848_iso_3_len_1229_ver_3 33 QLQLFWNYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENK 105 79***998899******************************************************** PP NF-YC 71 rrtlkksdiaaavtrtdifdflvdivprdelk 102 rrtl+k+diaaa+trtdifdflvdivprde+k cra_locus_15848_iso_3_len_1229_ver_3 106 RRTLQKNDIAAAITRTDIFDFLVDIVPRDEIK 137 ***************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.69E-34	14	127	IPR009072	Histone-fold
Pfam	PF00808	1.7E-20	55	118	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	7.4E-37	56	133	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MENNSQQATA PTQSSVYPAQ PPYHHLLQQQ QQQLQLFWNY QRQEIEQVND FKNHQLPLAR 60 IKKIMKADED VRMISAEAPI LFAKACELFI LELTIRSWLH AEENKRRTLQ KNDIAAAITR 120 TDIFDFLVDI VPRDEIKDEA ASLGVGVGVG VGPGGMAVGS AASGVPYYYP PMGQPAPPGV 180 MIGRPAVDPA VYVQPPPPPS QAWQSVWQTA AATTEDGSYV SGGAAGASSG GQGNLDGHDG 240 QG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	4e-55	41	133	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	111	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009619035.1	1e-123	PREDICTED: nuclear transcription factor Y subunit C-1-like
Refseq	XP_016439532.1	1e-123	PREDICTED: nuclear transcription factor Y subunit C-1-like
Swissprot	Q9SMP0	1e-104	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A1S3XIN1	1e-121	A0A1S3XIN1_TOBAC; nuclear transcription factor Y subunit C-1-like
STRING	XP_009619035.1	1e-122	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]