PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_15774_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 279aa MW: 30287.8 Da PI: 9.2243

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_15774_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105	4.3e-33	36	90	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av++LGG++kAtPk++l++m++kgLtl+h+kSHLQkYRl cra_locus_15774_iso_2_len_1400_ver_3 36 KPRLRWTADLHERFVDAVTKLGGPDKATPKSVLRVMGLKGLTLYHLKSHLQKYRL 90 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.0E-32	33	91	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.656	33	93	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.8E-24	36	91	IPR006447	Myb domain, plants
SuperFamily	SSF46689	3.94E-16	36	93	IPR009057	Homeodomain-like
Pfam	PF00249	9.3E-9	38	89	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-24	136	182	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MESMFGGGGG GMGGGCYPYE RNGNGGAAVV MTRDPKPRLR WTADLHERFV DAVTKLGGPD 60 KATPKSVLRV MGLKGLTLYH LKSHLQKYRL GQQAKKQNGA EQNKENSGDS FGQFSSQASA 120 SSSHSTRMNI EPGEIPITEA LKSQIEVQKR LQEQLEVQKK LQMRIEAQGK YLQTILEKAQ 180 KSLSVEANNG NNVEATRAEL SEFNLALSSL IENVKGEERK GGNVVDSRRK ICSSSSSYYG 240 AKDDDSNDVK LTVEGGGSIN FDLNTRSSSY DFIGNSGAV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-19	36	89	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	36	89	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	36	89	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	36	89	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027084214.1	1e-128	myb family transcription factor PHL11-like
Swissprot	C0SVS4	6e-81	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A068UVY1	1e-125	A0A068UVY1_COFCA; Uncharacterized protein
STRING	EOY25282	1e-103	(Theobroma cacao)
STRING	Solyc08g076010.2.1	1e-103	(Solanum lycopersicum)

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]