PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_15704_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C3H | ||||||||
Protein Properties | Length: 373aa MW: 40018.9 Da PI: 9.2149 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.2 | 1.9e-10 | 2 | 22 | 7 | 27 |
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 ++++rtGtCk+G++CkF+H++ cra_locus_15704_iso_4_len_1374_ver_3 2 QYYLRTGTCKFGATCKFHHPR 22 59*****************96 PP | |||||||
2 | zf-CCCH | 36.9 | 6.2e-12 | 44 | 68 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G +CkF+H++ cra_locus_15704_iso_4_len_1374_ver_3 44 EKECSYYLKTGQCKFGITCKFHHPQ 68 689********************97 PP | |||||||
3 | zf-CCCH | 37.4 | 4.4e-12 | 197 | 223 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++++G CkyG++Ck++H+p cra_locus_15704_iso_4_len_1374_ver_3 197 PGQPECQYYLKNGDCKYGSSCKYHHPP 223 5789*********************97 PP | |||||||
4 | zf-CCCH | 27.7 | 4.7e-09 | 245 | 269 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C+f+++ G+Ck+G +CkF H++ cra_locus_15704_iso_4_len_1374_ver_3 245 MQSCSFYLQKGHCKFGQNCKFDHPM 269 567********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.418 | 1 | 23 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6 | 2 | 22 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-8 | 2 | 22 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-4 | 3 | 22 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 41 | 69 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.427 | 41 | 69 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-4 | 43 | 68 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-9 | 44 | 68 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-4 | 47 | 67 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.342 | 196 | 224 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-6 | 196 | 223 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-9 | 198 | 223 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.37E-6 | 200 | 224 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 202 | 222 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.389 | 242 | 270 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.6E-5 | 242 | 269 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 244 | 272 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-6 | 244 | 269 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 248 | 267 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
XQYYLRTGTC KFGATCKFHH PRNAGGSLIN VPLNIYGYPL RMGEKECSYY LKTGQCKFGI 60 TCKFHHPQPA GTSVPATARP FYPTVQSASA PLEQFGAASS GYRVQRPPLL TSSYLPGAYG 120 AVLLHAGMVP IPNWSPYAGA INHTFSPGSQ SAAGATSLYG VSQFASSPPG VSGHYPSFPT 180 SGTLGSKQKD RNFPERPGQP ECQYYLKNGD CKYGSSCKYH HPPDWVVTKT YGLLSPLGLP 240 LRPGMQSCSF YLQKGHCKFG QNCKFDHPMG TLEYSPSASS LTDIPIASYM LSSSAMVATV 300 SFPELQADFI SGTKLGASTI KDQPYGSSLT SSVGLVISRS GPFSLSTVQI SSQSSNSNIA 360 RNKREDGEVH HPG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027116915.1 | 1e-175 | zinc finger CCCH domain-containing protein 32-like isoform X3 | ||||
Refseq | XP_027116923.1 | 1e-175 | zinc finger CCCH domain-containing protein 32-like isoform X4 | ||||
Swissprot | Q84W91 | 1e-133 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A068U7E0 | 1e-173 | A0A068U7E0_COFCA; Uncharacterized protein | ||||
STRING | XP_009776613.1 | 1e-152 | (Nicotiana sylvestris) |