PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_15704_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C3H

Protein Properties

Length: 361aa MW: 38773.3 Da PI: 8.3318

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_15704_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.7	6.9e-12	31	56	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ cra_locus_15704_iso_2_len_1340_ver_3 31 GEKECSYYLKTGQCKFGITCKFHHPQ 56 6789********************97 PP
2	zf-CCCH	37.4	4.2e-12	185	211	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++++G CkyG++Ck++H+p cra_locus_15704_iso_2_len_1340_ver_3 185 PGQPECQYYLKNGDCKYGSSCKYHHPP 211 5789*********************97 PP
3	zf-CCCH	27.8	4.5e-09	233	257	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C+f+++ G+Ck+G +CkF H++ cra_locus_15704_iso_2_len_1340_ver_3 233 MQSCSFYLQKGHCKFGQNCKFDHPM 257 567********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	2.9E-4	29	56	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.892	30	57	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-9	31	56	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-5	32	57	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.1E-4	35	55	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.342	184	212	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.8E-6	184	211	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-9	186	211	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.11E-6	188	212	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-4	190	210	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.389	230	258	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.6E-5	230	257	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.96E-6	232	260	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-6	232	257	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-4	236	255	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
SMDTHXEWYD LIFAYNFTCA FSVSLACLHQ GEKECSYYLK TGQCKFGITC KFHHPQPAGT 60 SVPATARPFY PTVQSASAPL EQFGAASSGY RVQRPPLLTS SYLPGAYGAV LLHAGMVPIP 120 NWSPYAGAIN HTFSPGSQSA AGATSLYGVS QFASSPPGVS GHYPSFPTSG TLGSKQKDRN 180 FPERPGQPEC QYYLKNGDCK YGSSCKYHHP PDWVVTKTYG LLSPLGLPLR PGMQSCSFYL 240 QKGHCKFGQN CKFDHPMGTL EYSPSASSLT DIPIASYMLS SSAMVATVSF PELQADFISG 300 TKLGASTIKD QPYGSSLTSS VGLVISRSGP FSLSTVQISS QSSNSNIARN KREDGEVHHP 360 G

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

SMDTHXEWYD LIFAYNFTCA FSVSLACLHQ GEKECSYYLK TGQCKFGITC KFHHPQPAGT  60
SVPATARPFY PTVQSASAPL EQFGAASSGY RVQRPPLLTS SYLPGAYGAV LLHAGMVPIP  120
NWSPYAGAIN HTFSPGSQSA AGATSLYGVS QFASSPPGVS GHYPSFPTSG TLGSKQKDRN  180
FPERPGQPEC QYYLKNGDCK YGSSCKYHHP PDWVVTKTYG LLSPLGLPLR PGMQSCSFYL  240
QKGHCKFGQN CKFDHPMGTL EYSPSASSLT DIPIASYMLS SSAMVATVSF PELQADFISG  300
TKLGASTIKD QPYGSSLTSS VGLVISRSGP FSLSTVQISS QSSNSNIARN KREDGEVHHP  360
G

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027116904.1	1e-144	zinc finger CCCH domain-containing protein 32-like isoform X1
Refseq	XP_027116915.1	1e-144	zinc finger CCCH domain-containing protein 32-like isoform X3
Refseq	XP_027116923.1	1e-144	zinc finger CCCH domain-containing protein 32-like isoform X4
Swissprot	Q84W91	1e-105	C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBL	A0A068U7E0	1e-142	A0A068U7E0_COFCA; Uncharacterized protein
STRING	XP_009776613.1	1e-124	(Nicotiana sylvestris)