PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_15685_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ERF | ||||||||
Protein Properties | Length: 402aa MW: 44849.6 Da PI: 4.5833 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.3 | 2.1e-19 | 129 | 178 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ kl+g cra_locus_15685_iso_1_len_1930_ver_3 129 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 178 89*******.**********82....35*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-29 | 128 | 185 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.657 | 129 | 186 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-21 | 129 | 185 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-12 | 129 | 178 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.14E-33 | 129 | 185 | No hit | No description |
SMART | SM00380 | 3.9E-38 | 129 | 192 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-10 | 130 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-10 | 152 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MDHHSLLCPV KYTEHRSFTK KLTKSSSSIK TKKSFPVIPK TVRISVTDPD ATDSSSDEED 60 ELFGRQRVKR YINEIKIQAV RYNLINNNTT NGSHLPKKRV TTPTHDSLLH QAKQRPTKVA 120 KETVGNVRKF RGVRQRPWGK WAAEIRDPAR RVRLWLGTYD TAEEAAMVYD NAAIKLRGPD 180 ALTNFITPPA KEKPVPSVSG YESGEESRNN LSSPTSVLRF RSSQSSEETE PTQSRSEPVQ 240 DEDNNSCPPP SCPSVVVVVE EDETTTFAAV EECQGETCTV PDYSNEYMPM DVPFLDNFFN 300 FELPPEQIPF EDTPVSTTFS NDFGGSMSLF DDDVVQHSSS SSATAAAALA LCSSDLSSDV 360 FFEDFKESSS SFQDLPSLEL DVGDYFQDNN NDFACFDTLL AI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 128 | 185 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009596437.1 | 1e-136 | PREDICTED: ethylene-responsive transcription factor CRF4-like | ||||
Refseq | XP_016445500.1 | 1e-136 | PREDICTED: ethylene-responsive transcription factor CRF4-like | ||||
Refseq | XP_027162452.1 | 1e-135 | ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | A0A1S3Y0A0 | 1e-134 | A0A1S3Y0A0_TOBAC; ethylene-responsive transcription factor CRF4-like | ||||
STRING | XP_009596437.1 | 1e-135 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |