PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_15678_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 311aa MW: 34629.7 Da PI: 4.5953

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_15678_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.8	9e-17	2	45	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 gr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ cra_locus_15678_iso_1_len_962_ver_3 2 GRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 45 89*****************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	8.5E-13	1	48	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	23.096	1	50	IPR017930	Myb domain
Pfam	PF00249	3.4E-15	2	45	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.25E-13	2	54	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.5E-22	2	47	IPR009057	Homeodomain-like
CDD	cd00167	1.42E-12	3	46	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009611	Biological Process	response to wounding
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
XGRFSFEEEE TIIQLHSILG NKWSAIAARL PGRTDNEIKN YWNTHIRKRL LRMGIDPVTH 60 SPRLDLLDLS SILNTSVYGS SSSHNQMNLS RLLGLQPLVN PELLRLATSL LSSQRKNQDF 120 PILQNQSQQN QFYSNPQLEN HQLPPLVQDI PNCTATLSTT CPPTCTTMDT VPFSNVEQFS 180 SNLPNFNSEN CELNHWQNVG ANFXDFAALQ NYGYYGGGCG SGSEGQSMLD NIPTANSDTR 240 TTFQSNNSNN FSFQSVLSNL STPSSSPAPL NSSSTYINSS STTTEDDREI SYCSNLLKFE 300 IPDILDVNEF M

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009801248.1	1e-109	PREDICTED: protein ODORANT1-like
Refseq	XP_011096186.1	1e-109	protein ODORANT1
Refseq	XP_016465732.1	1e-109	PREDICTED: protein ODORANT1-like
Refseq	XP_019229348.1	1e-109	PREDICTED: protein ODORANT1
TrEMBL	A0A1S3ZMZ6	1e-108	A0A1S3ZMZ6_TOBAC; protein ODORANT1-like
TrEMBL	A0A1U7YDP8	1e-108	A0A1U7YDP8_NICSY; protein ODORANT1-like
TrEMBL	A0A314KLT6	1e-108	A0A314KLT6_NICAT; Transcription factor myb39
STRING	XP_009801248.1	1e-108	(Nicotiana sylvestris)