PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_15559_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 562aa MW: 60905.6 Da PI: 6.6099

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_15559_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.8e-09	381	428	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq cra_locus_15559_iso_3_len_1869_ver_3 381 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 428 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.38E-10	375	432	No hit	No description
SuperFamily	SSF47459	9.29E-17	375	445	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-16	377	446	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	377	427	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-6	381	428	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	383	433	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MDKEYFFNNG IPPPLQFEPV LHAWNTFSSG QDVNCSSEQS FLNSNWEKGT DQFTQLESTL 60 SSMVSSPVVP SSSSAAPNDA FAIRELIGKL GPLGGMSQPF PSVTNAAAAS SYIGSSVNNS 120 CYTTPLNSPP KLQGMPILNQ LAKENLPSLG NSMPMMNPPL PALSADPGFA ERAAKFSCFG 180 SRSFNGRTSQ IGLNNAELPY RSTTPMTGNG KLPRVASSPS LKQAGSPLEN RTSSQPQMET 240 RSINGLVSVS DKKLVNKFPP GTAGPSSNEE SSVSDQVPSG ENGPKTPNDL NSRKRKTISR 300 GKTKENDSSA PTTTANNKGS AENDDEQNAK XIQATDANAE EKTGGKTTEA KNDANKADQK 360 PPEPPKDYIH VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCNKV TGKALMLDEI 420 INYVQSLQRQ VEFLSMKLAS VNPRLELNTD NLISKDIFQA NASLPQQPLY HHVDSSTPAF 480 YGHQPQQNPH LQQTNGSVDH PVVDTTLCRN IGLQLPPLDG FSESLPQFPS FTEEDLQSIV 540 QMGFQSQGFP VTNQTSHMKV EL

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MDKEYFFNNG IPPPLQFEPV LHAWNTFSSG QDVNCSSEQS FLNSNWEKGT DQFTQLESTL  60
SSMVSSPVVP SSSSAAPNDA FAIRELIGKL GPLGGMSQPF PSVTNAAAAS SYIGSSVNNS  120
CYTTPLNSPP KLQGMPILNQ LAKENLPSLG NSMPMMNPPL PALSADPGFA ERAAKFSCFG  180
SRSFNGRTSQ IGLNNAELPY RSTTPMTGNG KLPRVASSPS LKQAGSPLEN RTSSQPQMET  240
RSINGLVSVS DKKLVNKFPP GTAGPSSNEE SSVSDQVPSG ENGPKTPNDL NSRKRKTISR  300
GKTKENDSSA PTTTANNKGS AENDDEQNAK XIQATDANAE EKTGGKTTEA KNDANKADQK  360
PPEPPKDYIH VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCNKV TGKALMLDEI  420
INYVQSLQRQ VEFLSMKLAS VNPRLELNTD NLISKDIFQA NASLPQQPLY HHVDSSTPAF  480
YGHQPQQNPH LQQTNGSVDH PVVDTTLCRN IGLQLPPLDG FSESLPQFPS FTEEDLQSIV  540
QMGFQSQGFP VTNQTSHMKV EL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	291	296	SRKRKT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027177979.1	0.0	transcription factor bHLH62-like
TrEMBL	A0A140KER3	0.0	A0A140KER3_9GENT; Uncharacterized protein
STRING	EMJ02381	0.0	(Prunus persica)