PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_1542_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 160aa MW: 17939 Da PI: 9.9809 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.4 | 2.8e-07 | 15 | 51 | 11 | 47 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++ + + +G+g+W+ I+r + +t+ q+ s+ qky cra_locus_1542_iso_3_len_1081_ver_3 15 RFLLGLQAHGKGDWRNISRNFVRSKTPTQVASHAQKY 51 7888999***************9*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.45E-9 | 14 | 55 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.39E-4 | 14 | 52 | No hit | No description |
TIGRFAMs | TIGR01557 | 7.5E-11 | 14 | 55 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 8.1E-5 | 15 | 51 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MIIDLDTAHV FDYRRFLLGL QAHGKGDWRN ISRNFVRSKT PTQVASHAQK YFLRQLSGGK 60 DKKRPSIHDI TTVHLPNTSP SDDNKSPNSS DKSAPSASSK LLLDWNNSND GLLMVFDSNH 120 GNESMESLFD IASRGHRYAA NICTTANSRF HIQPTKYVHG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027110847.1 | 8e-74 | transcription factor DIVARICATA-like | ||||
Refseq | XP_027110848.1 | 8e-74 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-36 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A068V2E5 | 2e-72 | A0A068V2E5_COFCA; Uncharacterized protein | ||||
STRING | VIT_13s0019g03370.t01 | 1e-52 | (Vitis vinifera) |
Publications ? help Back to Top | |||
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