PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15329_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 501aa    MW: 56398.8 Da    PI: 4.6966
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15329_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.7e-13274317755
                                           HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                                   HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                            +Er+RR+++N+++  Lr l+Pk +      Kl+ a+iL  AveY+k+Lq
  cra_locus_15329_iso_2_len_1501_ver_3 274 VAERKRRKKLNDRLYALRALVPKiS------KLDRAAILGDAVEYVKDLQ 317
                                           68*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.6E-8370IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.497267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.42E-13269321No hitNo description
SuperFamilySSF474598.77E-17270330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-16273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10274317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-17274330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
PSSIPLDSGI YAEALMSNQI SWMNFSPNLD SNLSQETVGT RVLIPIPGGL VELFVAKQVP  60
EDQEIIEFIT AQCNISLEQQ GMIHSNATNS NFEVNFNGFH DAPSNNLATV EIDDHQNVIS  120
HDMFNSNLKD NNNVNLPHDV SIDQMPVCHS STRFSQHYNH NSDHAGSKND VIFYQGTNNH  180
QELNPFKTST DGGFQQDVEL MQNRVMNHHQ GNMFMHMMEP LEDKEDQGNN DNDSFKQDNI  240
RSNAAISDSD PNEEDEDAKY RRRPGKGPQS KNLVAERKRR KKLNDRLYAL RALVPKISKL  300
DRAAILGDAV EYVKDLQKQV KDLQDELEEN SDDEDQRNIE TSKNQSIPNQ QDIFQQHKGI  360
IAASNGGVGP PKQNNESENN VEKVQQMEPQ VEVAQLDGNE FFVRVFCEHK PGEFVRLLEA  420
LNSLNLEVGN VNATRHTCLV SNVFKVERKD NEMIQAEYVR SSLLELTRNP SSTEWAGNGM  480
AAKALEDGNR NDQQGGGGRR X
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260281RRRPGKGPQSKNLVAERKRRKK
2275282ERKRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027169354.11e-180transcription factor ABORTED MICROSPORES
TrEMBLA0A068V8D31e-178A0A068V8D3_COFCA; Uncharacterized protein
STRINGcassava4.1_029776m1e-139(Manihot esculenta)