PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_15328_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 323aa MW: 35857.6 Da PI: 9.8775

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_15328_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.7	6.8e-15	253	296	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++Lkk+ cra_locus_15328_iso_2_len_1404_ver_3 253 RRQKRMIKNRESAARSRARKQAYTHELENKVSRLEEENERLKKQ 296 79***************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.3E-14	248	297	No hit	No description
SMART	SM00338	1.2E-13	249	321	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.656	251	296	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.5E-12	253	296	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.06E-23	253	299	No hit	No description
SuperFamily	SSF57959	1.44E-11	253	301	No hit	No description
PROSITE pattern	PS00036	0	256	271	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MGSQGGIGSS SSMGGNHSQE PKSSLLARQG SIYSLTLDEV QHHLGDLGKP LISMNLDELL 60 KTVWTAEANQ GIGGMDFGVQ QHGQLSPVLN QQSGVTLSRD LSKKTVDQVW HDIQQGQKKN 120 SLDRKSHERQ LTLGEMTLED FLVKAGVVAE PLPKKNLGSG LGIDPLSMQQ QNVQQAAQWM 180 HYQIPSIHQP AYMPGHPVQQ PLPISSNSLI DAAFPESQMA MSPSTLMGTL SDTQTPGRKR 240 VASGDVIEKT VERRQKRMIK NRESAARSRA RKQAYTHELE NKVSRLEEEN ERLKKQREME 300 RALPVLPIPE PKYQLRRTSS SSF

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027072798.1	1e-178	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_027072799.1	1e-178	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_027175921.1	1e-178	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_027175922.1	1e-178	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_027175924.1	1e-178	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	1e-100	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A068VAQ2	1e-174	A0A068VAQ2_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400072260	1e-148	(Solanum tuberosum)

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]