PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15313_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 437aa    MW: 49290.4 Da    PI: 6.2449
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15313_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS276.39.6e-85504372373
                                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekns 74 
                                           ++lLl+cA a++s+d +laq++++ l++ asp gdp+qRl++ f++AL +r++r ++++  + +   ++    
  cra_locus_15313_iso_1_len_1469_ver_3  50 EKLLLHCASALESNDVTLAQQVMWVLNNVASPIGDPNQRLTSWFLRALISRVSRVCPSMNLKGNNALQR---- 118
                                           689***************************************************777776555444444.... PP

                                  GRAS  75 seelaalkl..fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiT 145
                                            + +++++l  ++++ P++ f++ + N+aI +a++g ++vHi+Df+i++++QWp+L++aLa+Rp+gppslR+ 
  cra_locus_15313_iso_1_len_1469_ver_3 119 -RLMTVTELagYVDLIPWHMFGFCASNSAIFRAIQGFSKVHILDFSITYCMQWPTLIDALAKRPNGPPSLRLS 190
                                           .22222333449************************************************************* PP

                                  GRAS 146 gvgspesg...skeeleetgerLakfAeelgvpfefnvl.........vakrledl........eleeLrvkp 198
                                           +     ++    + ++ee+g+rLa+fA+  +vpfef+++                         ++++L+++ 
  cra_locus_15313_iso_1_len_1469_ver_3 191 VPLWRPPVppfLNVSTEEVGNRLANFAKFKEVPFEFHLIqedqysssfN------YdlflnqvlNPSTLKLRD 257
                                           96554444568999************************96666433221......0233444459******** PP

                                  GRAS 199 gEalaVnlvlqlhrll.......desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
                                           +Eal++n++  l +++        ++ ++ s rd +++ +k+lsP ++++v++++d+++ ++  r++ +++y 
  cra_locus_15313_iso_1_len_1469_ver_3 258 DEALVINCQNWLRYIPdeviingGSHDHMISFRDCFIERMKDLSPCIITLVDEDSDLSAMNLTSRITTCFNYL 330
                                           ****************66666653445555689**************************************** PP

                                  GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                                           +  fd+le+ lp++s+ ri +E   +g +i+n++  eg++r+er e+  k ++r++  G+ ++p+se+++k++
  cra_locus_15313_iso_1_len_1469_ver_3 331 WIPFDALETFLPKDSSLRIEYEGD-IGHKIENIIGFEGSQRIERLESGVKMSQRMRINGLLSLPFSEETVKEV 402
                                           ************************.************************************************ PP

                                  GRAS 338 klllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                           k+ll +++  g+ +++e++ lvl+Wk+++ v+++aW
  cra_locus_15313_iso_1_len_1469_ver_3 403 KSLLDQHA-SGWGMKKEDDMLVLTWKGHNSVFATAW 437
                                           ********.8999*********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.3923419IPR005202Transcription factor GRAS
PfamPF035143.3E-8250437IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
XKTMKAELRG NPTQVSSLQN PSLFNTAQSP STISGTLKGC LGSLDGACIE KLLLHCASAL  60
ESNDVTLAQQ VMWVLNNVAS PIGDPNQRLT SWFLRALISR VSRVCPSMNL KGNNALQRRL  120
MTVTELAGYV DLIPWHMFGF CASNSAIFRA IQGFSKVHIL DFSITYCMQW PTLIDALAKR  180
PNGPPSLRLS VPLWRPPVPP FLNVSTEEVG NRLANFAKFK EVPFEFHLIQ EDQYSSSFNY  240
DLFLNQVLNP STLKLRDDEA LVINCQNWLR YIPDEVIING GSHDHMISFR DCFIERMKDL  300
SPCIITLVDE DSDLSAMNLT SRITTCFNYL WIPFDALETF LPKDSSLRIE YEGDIGHKIE  360
NIIGFEGSQR IERLESGVKM SQRMRINGLL SLPFSEETVK EVKSLLDQHA SGWGMKKEDD  420
MLVLTWKGHN SVFATAW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-562043765472Protein SHORT-ROOT
5b3h_B3e-572043711418Protein SHORT-ROOT
5b3h_E3e-572043711418Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027061119.10.0scarecrow-like protein 32 isoform X1
RefseqXP_027063837.10.0scarecrow-like protein 32 isoform X1
RefseqXP_027172563.10.0scarecrow-like protein 32 isoform X1
RefseqXP_027172609.10.0scarecrow-like protein 32 isoform X1
TrEMBLA0A068UW460.0A0A068UW46_COFCA; Uncharacterized protein
STRINGEOX992080.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103032227