PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15250_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 327aa    MW: 36336.5 Da    PI: 5.4559
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15250_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12115166155
                                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                           +r++h ++Er+RR+++N+ ++ +r+l+P++   + ++ + a+i   A++++k+L+
  cra_locus_15250_iso_1_len_1175_ver_3 115 QRMTHIAVERNRRKQMNDYLAVIRSLMPSS---YVQRGDQASIIGGAINFVKELE 166
                                           79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.9E-13113170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.14E-12113170No hitNo description
PROSITE profilePS5088814.513114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15114177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-10115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-8120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MALDTAIYPA SQDSFGYICK ELYGLCAAGA NNGFMNNYGF DNFQLQEEKG IIGNWELSSS  60
SSVMQQNVKD QWDPNSSPEA CTGDVPAPPP QDAVPAKRKR RRTRTCKNKE ELENQRMTHI  120
AVERNRRKQM NDYLAVIRSL MPSSYVQRGD QASIIGGAIN FVKELEQHLQ TLEATNQIRG  180
SIENQPLENN ESSGPPTSPV LFGDFFTFPQ YSTRSSSNAS ELENSGQHRL AALAEIEVTM  240
AESHANMKIL SKKRPRQLLK LVAGLQCLWL TILHLNVTTV DQMVLYSLSV KLEEGCQLTT  300
VDEIADAVNL LLGRIQEEAA SSXSKPX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196101KRKRRR
297101RKRRR
397102RKRRRT
4115126RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027090909.11e-127transcription factor bHLH94-like
SwissprotQ9C7T43e-89BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A068U0I71e-126A0A068U0I7_COFCA; Uncharacterized protein
STRINGXP_010272971.11e-119(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]