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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
cra_locus_15245_iso_2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 178aa MW: 19220.5 Da PI: 10.6445 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_15245_iso_2 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 216.9 | 1.9e-66 | 6 | 178 | 131 | 301 |
GAGA_bind 131 klealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad..erskaekksidlvlngv 201
+++a pi++ a++++ +kkk ++++ k++k+k + k +++ +sk k+k+++++ + k +k+ v n
cra_locus_15245_iso_2_len_1026_ver_3 6 CIDAIPIRSVAPTSECAKKKVTSKSMKVKKKKPSAKFSHQNGSSKLKSKQPKKSpsHGGKVVRKNPTEVYNAA 78
67889999999999999999889999999988888887777777767776666534558999****9****** PP
GAGA_bind 202 slDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaa 274
++D s++P+PvCsCtG+ r CYk G+ GWqS+CCtttiS+yPLP+s+ ++gaR++grKm +g+++klL +La+
cra_locus_15245_iso_2_len_1026_ver_3 79 KFDFSKVPPPVCSCTGVARGCYKCGTCGWQSSCCTTTISQYPLPMSPSKPGARLGGRKMTTGVYTKLLCRLAT 151
************************************************************************* PP
GAGA_bind 275 eGydlsnpvDLkdhWAkHGtnkfvtir 301
eG dls pvDLk+hWAkHGtnkfvti+
cra_locus_15245_iso_2_len_1026_ver_3 152 EGADLSYPVDLKHHWAKHGTNKFVTIK 178
**************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 178 aa
Download sequence Send
to blast |
MNSGPCIDAI PIRSVAPTSE CAKKKVTSKS MKVKKKKPSA KFSHQNGSSK LKSKQPKKSP 60
SHGGKVVRKN PTEVYNAAKF DFSKVPPPVC SCTGVARGCY KCGTCGWQSS CCTTTISQYP 120
LPMSPSKPGA RLGGRKMTTG VYTKLLCRLA TEGADLSYPV DLKHHWAKHG TNKFVTIK
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 22 | 36 | KKKVTSKSMKVKKKK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
