PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15148_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 307aa    MW: 33628.8 Da    PI: 5.0816
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15148_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.2e-1860110155
                                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                           + y+GVr +  +g+Wv+eIr+p++   + r++lg+f ++e+Aa+a++ a+++++g
  cra_locus_15148_iso_1_len_1199_ver_3  60 PVYRGVRMRA-WGKWVSEIREPKK---KSRIWLGTFASPEMAARAHDVAALSIKG 110
                                           68*****998.**********854...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.1E-1260110IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-2061119IPR016177DNA-binding domain
SMARTSM003803.2E-3561124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-3161119IPR001471AP2/ERF domain
PROSITE profilePS5103222.82761118IPR001471AP2/ERF domain
CDDcd000186.68E-3062120No hitNo description
PRINTSPR003672.3E-96273IPR001471AP2/ERF domain
PRINTSPR003672.3E-984100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MAEPTNSETE STSHSFSSSP SPSPSPPSSA QNHRKRSREE TTTSPATAKT NNNHNNSKHP  60
VYRGVRMRAW GKWVSEIREP KKKSRIWLGT FASPEMAARA HDVAALSIKG KSAILNFPEL  120
ADTLPRPVTC SPRDVQAAAL KAAHMEIDID EMEDHHRHKS RNNKIITNNN NGSDESSTTS  180
SSSRDVTSCF STMTSSSSSC SLLSGLTSAE DVSTTAEADA EAQPQVQTAQ QDELSEIVEL  240
PSLGPSYDSV DSAREELLFM DSVDSMGWDY GHPWLMHGCV ETNGYFGESN YMAMAEVDSF  300
EGLLWQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1756118972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027175236.19e-92ethylene-responsive transcription factor TINY-like
TrEMBLA0A068U4R15e-87A0A068U4R1_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225