PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_15057_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | CO-like | ||||||||
Protein Properties | Length: 408aa MW: 44150.2 Da PI: 5.0587 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.1 | 6.2e-07 | 46 | 84 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Htvv 40 C++++++++ C + ++ lC++C H+g H+++ cra_locus_15057_iso_3_len_2363_ver_3 46 LLCERCNSQPAFVRCIEEKVSLCPNCDWIAHNGsaHKRQ 84 57*************************999*98999976 PP | |||||||
2 | CCT | 64.8 | 2.4e-22 | 351 | 394 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RYkeK+ktRkFeKk+rY+sRKa+A+ R+RvKGrFvk+ cra_locus_15057_iso_3_len_2363_ver_3 351 RSDAVMRYKEKKKTRKFEKKVRYASRKARADVRKRVKGRFVKAG 394 889**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.115 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.02E-7 | 4 | 47 | No hit | No description |
SMART | SM00336 | 6.7E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00914 | 47 | 84 | No hit | No description |
Pfam | PF06203 | 5.6E-17 | 351 | 393 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.438 | 351 | 393 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MGYICDFCGE QRSVVHCRSD AASLCLSCDR NVHSANALSR RHSRTLLCER CNSQPAFVRC 60 IEEKVSLCPN CDWIAHNGSA HKRQAVNCYS GCPSSAELST IWPFFAEVPT VGDAACERVI 120 GLMTINEDPP DGQGAQGKID VQDASVAVAV ASFHNVDKST IWMGSSGIPH DSKLQNVEQP 180 AGSTFTAPPK VCYSGSKGPT LCEEDTFYDS FNMDEVDLSI ENYDELFGVG LGNPEKLFED 240 DDIDGLFGMD ISGAESNCQD AHAVEGSSIG CVNATQPACS NAASADSIMS CKTEPNLCFA 300 RQGHSSLSFS GITGDSNAGD YQDCGASSML LMGEPPWCPP CAENSLPSSS RSDAVMRYKE 360 KKKTRKFEKK VRYASRKARA DVRKRVKGRF VKAGDAYDYD PLSPTRSY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027061947.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
Refseq | XP_027169955.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_027169956.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9LUA9 | 1e-141 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A068V174 | 0.0 | A0A068V174_COFCA; Uncharacterized protein | ||||
STRING | EOX93573 | 0.0 | (Theobroma cacao) |
Publications ? help Back to Top | |||
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