PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15057_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family CO-like
Protein Properties Length: 408aa    MW: 44150.2 Da    PI: 5.0587
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15057_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.16.2e-074684440
                              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Htvv 40
                                            C++++++++   C + ++ lC++C    H+g  H+++
  cra_locus_15057_iso_1_len_2225_ver_3 46 LLCERCNSQPAFVRCIEEKVSLCPNCDWIAHNGsaHKRQ 84
                                          57*************************999*98999976 PP
2CCT64.82.4e-22351394144
                                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                           R  a++RYkeK+ktRkFeKk+rY+sRKa+A+ R+RvKGrFvk+ 
  cra_locus_15057_iso_1_len_2225_ver_3 351 RSDAVMRYKEKKKTRKFEKKVRYASRKARADVRKRVKGRFVKAG 394
                                           889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.115147IPR000315B-box-type zinc finger
CDDcd000217.02E-7447No hitNo description
SMARTSM003366.7E-7447IPR000315B-box-type zinc finger
CDDcd000210.009144784No hitNo description
PfamPF062035.6E-17351393IPR010402CCT domain
PROSITE profilePS5101715.438351393IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGYICDFCGE QRSVVHCRSD AASLCLSCDR NVHSANALSR RHSRTLLCER CNSQPAFVRC  60
IEEKVSLCPN CDWIAHNGSA HKRQAVNCYS GCPSSAELST IWPFFAEVPT VGDAACERVI  120
GLMTINEDPP DGQGAQGKID VQDASVAVAV ASFHNVDKST IWMGSSGIPH DSKLQNVEQP  180
AGSTFTAPPK VCYSGSKGPT LCEEDTFYDS FNMDEVDLSI ENYDELFGVG LGNPEKLFED  240
DDIDGLFGMD ISGAESNCQD AHAVEGSSIG CVNATQPACS NAASADSIMS CKTEPNLCFA  300
RQGHSSLSFS GITGDSNAGD YQDCGASSML LMGEPPWCPP CAENSLPSSS RSDAVMRYKE  360
KKKTRKFEKK VRYASRKARA DVRKRVKGRF VKAGDAYDYD PLSPTRSY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027061947.10.0zinc finger protein CONSTANS-LIKE 9-like isoform X1
RefseqXP_027169955.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_027169956.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9LUA91e-141COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A068V1740.0A0A068V174_COFCA; Uncharacterized protein
STRINGEOX935730.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]