PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15049_iso_7
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 236aa    MW: 25585.2 Da    PI: 7.9124
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15049_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.3e-183781351
                                   AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaark 51
                                          ++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa++
  cra_locus_15049_iso_7_len_1699_ver_3 37 FRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAAR 81
                                          8*******.**********883....5*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.3E-313699IPR001471AP2/ERF domain
CDDcd000182.41E-153668No hitNo description
PfamPF008474.2E-113681IPR001471AP2/ERF domain
PROSITE profilePS5103221.7073693IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-283793IPR001471AP2/ERF domain
PRINTSPR003673.0E-103748IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-203794IPR016177DNA-binding domain
PRINTSPR003673.0E-105975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MRRGRAAAAA KQAAAVAAAA AAAGEANGSG GSKEIRFRGV RKRPWGRFAA EIRDPWKKTR  60
VWLGTFDSAE DAARAYDAAA RTXXXXXAKT NFPLPPTSSY QQFNNFPNPN PNFNNDPAMF  120
IDHPQNRLYH QEAHQIMPPQ RPTSSSLSST VESFSGPRPQ TTVTIVPSST RRHPRSPPVA  180
PDDCHSDCDS SSSVVDDGDC DIASSSFRKP ALPFDLNLPP VMDADADDLH CTALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-173193972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063176.11e-87ethylene-responsive transcription factor 3-like
RefseqXP_027064307.15e-88ethylene-responsive transcription factor 3-like
SwissprotQ9SXS81e-59ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A068UZX41e-86A0A068UZX4_COFCA; Uncharacterized protein
STRINGXP_009770784.17e-84(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33302347