PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_15030_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 23584.4 Da PI: 5.5113 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.4e-19 | 75 | 124 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd + ng r++lg+f++aeeAa a+++a+ +++g cra_locus_15030_iso_1_len_1003_ver_3 75 YRGVRRRP-WGKYAAEIRDSTRNG--IRVWLGTFDSAEEAALAYDQAAFSMRG 124 9*******.**********44465..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.72E-31 | 73 | 133 | No hit | No description |
PROSITE profile | PS51032 | 23.064 | 74 | 132 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.47E-23 | 74 | 134 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-37 | 74 | 138 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-30 | 74 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 75 | 86 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-14 | 75 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 98 | 114 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MQPSFSWDDV LPFNFNDSED MFLLDVLSEV VRESSDTNSS SSAAAAAASA SSINKEEEVT 60 SNIKFKGGAK KEQNYRGVRR RPWGKYAAEI RDSTRNGIRV WLGTFDSAEE AALAYDQAAF 120 SMRGSMAVLN FPIEIVKESL REMKFKCGSE DGCSPVVELK KRHSSMKKKS GKNRKNRGRE 180 LLSENVVVFE DLGAEYLEEL LNSSEINMGN R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-30 | 75 | 135 | 15 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019181066.1 | 5e-77 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 4e-71 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A2R6PP94 | 2e-80 | A0A2R6PP94_ACTCH; Ethylene-responsive transcription factor 1B like | ||||
STRING | XP_010262305.1 | 6e-71 | (Nelumbo nucifera) | ||||
STRING | XP_010274787.1 | 1e-70 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Publications ? help Back to Top | |||
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