PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_15024_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Dof

Protein Properties

Length: 314aa MW: 33727.2 Da PI: 8.9661

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_15024_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.6e-39	48	108	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+++ cra_locus_15024_iso_5_len_995_ver_3 48 KEAALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKHTT 108 67899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-26	40	100	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.5E-34	51	106	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.994	52	106	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	54	90	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
XGIGVVHQQQ VNKGGIIEGG GGGGGAGAGA LNSKSGSYER KAIIRPQKEA ALNCPRCNST 60 NTKFCYYNNY SLTQPRYFCK TCRRYWTEGG TLRNVPVGGG SRKNKHTTSR SSSSSSNPHL 120 KKLNPDLTHN PNKIIPHQPH HDLNLAYNPV PPPPKSLVHD YGIISGGGGG AGGFLNFPMR 180 HNLPELELLK VGSSSLSSLM SMPLSDCNNS IFYPSSSSSS EIPNYKFNFS LDGSGVENNG 240 NYGISVQDNQ PVVLHIRGGG DDAAAGRSLF LPYEELNLKT DHHEIEDQRR NKGESTTTGY 300 CWNGMLGGAA GSTW

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419