PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_15010_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | B3 | ||||||||
Protein Properties | Length: 235aa MW: 26943 Da PI: 10.2917 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.6 | 1.7e-16 | 129 | 215 | 1 | 93 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 f+ ++ps+v+ +l l f+++h ++++ +tl de+g +W + +rk++ l++GWk+F+ +++ cra_locus_15010_iso_2_len_1115_ver_3 129 FIRSMLPSHVTGGFWLGLQSAFCKRHL--PRRDDIVTLIDEQGDEWPTVYLFRKTG----LSGGWKKFAVDHE 195 778899********************4..345668***************999999....************* PP --TT-EEEEEE-SSSEE..E CS B3 74 LkegDfvvFkldgrsefelv 93 L +gD +vF+l++ + f+ + cra_locus_15010_iso_2_len_1115_ver_3 196 LVDGDALVFHLIQPTVFKIY 215 ***********997777443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-20 | 122 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.86E-23 | 123 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.30E-25 | 127 | 218 | No hit | No description |
Pfam | PF02362 | 1.8E-13 | 129 | 215 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.6E-22 | 129 | 220 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.379 | 129 | 220 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MVMSKVKYEA IRQQRMEENK RKLEQLHLPL LSQALQKASS PKPSPMKNVK PRIIRTELVP 60 VRRSGRFANK PAPHYKEVIF NERVHLPRRI VYPKRGLSNR VYASDEARES AIQKAEKLES 120 TLEGDHPSFI RSMLPSHVTG GFWLGLQSAF CKRHLPRRDD IVTLIDEQGD EWPTVYLFRK 180 TGLSGGWKKF AVDHELVDGD ALVFHLIQPT VFKIYITRVN SSAEENVTEA SDVSS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027093434.1 | 1e-128 | B3 domain-containing protein Os06g0194400-like | ||||
Refseq | XP_027149635.1 | 1e-128 | B3 domain-containing protein Os06g0194400 isoform X2 | ||||
Swissprot | Q1G3M3 | 1e-67 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | A0A068U161 | 1e-126 | A0A068U161_COFCA; Uncharacterized protein | ||||
STRING | XP_009783454.1 | 1e-116 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1628 | 23 | 71 |
Publications ? help Back to Top | |||
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