PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_14962_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 287aa MW: 32763.5 Da PI: 7.8223 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.4 | 4.5e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++++ G g +W + ++++g++R++k+c++rw++yl cra_locus_14962_iso_2_len_1049_ver_3 14 KGPWSPEEDAKLKSYIEKNGIGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79******************999************************97 PP | |||||||
2 | Myb_DNA-binding | 36.1 | 1.5e-11 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia ++ gRt++++k++w++ cra_locus_14962_iso_2_len_1049_ver_3 69 GGFSEEEDHIICSLYLSIGSR-WSIIAGQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.692 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.8E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.41E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 20.596 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-8 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.07E-5 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 287 aa Download sequence Send to blast |
XGRAPCCDKA NVKKGPWSPE EDAKLKSYIE KNGIGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDHIIC SLYLSIGSRW SIIAGQLPGR TDNDIKNYWN TRLKKKLLGS 120 KQRYKNQIRT NIPSSVKQEE IHEREIIDNN AFVTNQFQQS LALAAAAPIF QDQEQFGGSN 180 LISEGQFDTS LINSMMINGT NGTTTTSNYF DNYYNGQSMM MMMSSGSFNA TDDYYNINIS 240 EQIWEGGLDQ SFSSLQNYEN SIQDYCTIHE YSRKLQMQHP HYNTVLQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-23 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023878050.1 | 5e-85 | transcription factor RAX3-like isoform X2 | ||||
Refseq | XP_023884860.1 | 5e-85 | transcription factor RAX3-like isoform X2 | ||||
TrEMBL | A0A2I4HW26 | 1e-82 | A0A2I4HW26_JUGRE; transcription factor RAX3-like | ||||
TrEMBL | J7FAJ6 | 2e-82 | J7FAJ6_QUESU; R2R3-MYB transcription factor MYB1.2 | ||||
TrEMBL | J7FAY5 | 1e-82 | J7FAY5_QUESU; R2R3-MYB transcription factor MYB1.1 | ||||
STRING | cassava4.1_028492m | 2e-82 | (Manihot esculenta) |