PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_14962_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB | ||||||||
Protein Properties | Length: 288aa MW: 32894.7 Da PI: 7.8223 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.4 | 4.6e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++++ G g +W + ++++g++R++k+c++rw++yl cra_locus_14962_iso_1_len_1052_ver_3 14 KGPWSPEEDAKLKSYIEKNGIGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79******************999************************97 PP | |||||||
2 | Myb_DNA-binding | 36.1 | 1.5e-11 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia ++ gRt++++k++w++ cra_locus_14962_iso_1_len_1052_ver_3 69 GGFSEEEDHIICSLYLSIGSR-WSIIAGQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.692 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.84E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.44E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 20.596 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-8 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.09E-5 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
XGRAPCCDKA NVKKGPWSPE EDAKLKSYIE KNGIGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDHIIC SLYLSIGSRW SIIAGQLPGR TDNDIKNYWN TRLKKKLLGS 120 KQRYKNQIRT NIPSSVKQEE IHEREIIDNN AFVTNQFQQS LALAAAAPIF QDQEQFGGSN 180 LISEGQFDTS LINSMMINGT NGTTTTSNYF DNYYNGQSMM MMMMSSGSFN ATDDYYNINI 240 SEQIWEGGLD QSFSSLQNYE NSIQDYCTIH EYSRKLQMQH PHYNTVLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-23 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023878050.1 | 5e-85 | transcription factor RAX3-like isoform X2 | ||||
Refseq | XP_023884860.1 | 5e-85 | transcription factor RAX3-like isoform X2 | ||||
TrEMBL | A0A2I4HW26 | 1e-82 | A0A2I4HW26_JUGRE; transcription factor RAX3-like | ||||
TrEMBL | J7FAJ6 | 2e-82 | J7FAJ6_QUESU; R2R3-MYB transcription factor MYB1.2 | ||||
TrEMBL | J7FAY5 | 1e-82 | J7FAY5_QUESU; R2R3-MYB transcription factor MYB1.1 | ||||
STRING | cassava4.1_028492m | 1e-82 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |