PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_14936_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

M-type_MADS

Protein Properties

Length: 280aa MW: 31793.1 Da PI: 9.5484

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_14936_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74	1.2e-23	25	75	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++ rqvt+skR+ g++KKA+EL vLCd+++a i+fs++g+l +ss cra_locus_14936_iso_6_len_1000_ver_3 25 KKIENSTARQVTYSKRKDGMIKKANELAVLCDIDIAFIMFSPSGRLTCFSS 75 68********************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.908	17	77	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.1E-29	17	76	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.1E-24	18	79	IPR002100	Transcription factor, MADS-box
CDD	cd00120	1.62E-25	18	75	No hit	No description
PRINTS	PR00404	8.5E-21	19	39	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-22	26	73	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.5E-21	39	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.5E-21	54	75	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
XKICFSMHSR GNSSSNTTRN KLALKKIENS TARQVTYSKR KDGMIKKANE LAVLCDIDIA 60 FIMFSPSGRL TCFSSNRSYF SGFCRVEDVF LRFLDRPDDL KGGSSARKEL IIRNMMKLKY 120 DAEMLEKIAE IESLEEKLGE FKKRKHEANI KMSHYQPDLE KIHSSIEANA YLRFLEDSVK 180 RIHVARAKLL GKAVEPEELG NSKATIINSE VSGLSVFGES STASQYSGLQ PPRGMSITSQ 240 ELSVEDYLPM GTNMNRDYQM MAQNPQYMPS TRRFSYPSNL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012830478.1	1e-58	PREDICTED: MADS-box protein SOC1-like isoform X1
STRING	Migut.H01211.1.p	6e-62	(Erythranthe guttata)