PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_14860_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 394aa MW: 44096.6 Da PI: 7.9443

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_14860_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.8	6.8e-12	319	363	6	54
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+L cra_locus_14860_iso_4_len_1547_ver_3 319 SIAERVRRTRISERMKKLQELVPNM----DKQTNTADMLDLAVHYIKDL 363 689*******************7....688*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.875	313	363	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-15	316	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.84E-11	317	366	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-13	318	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-9	319	363	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-12	319	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MDSDDDSTNE NNSGLLRYRS APSSFLANFC SDIIGADDDD DHHHKRVKIS TIETETQWFM 60 TSGQQQSNSQ FSSHVLKDNS NDFALNSPQL PPHPQYPRSN AITQLNGGFL FRVQNSNLMR 120 QNSSPAGFFS HLSPQNANGY AGSAFPNGAS TGTSAVLSPS SNRFSSGNGI PSNLGMMLSR 180 ISESENENPI PGRTNNINIP DPEPDHQKLS NASNNRESQL YCPPLPFSSR NNNNNSSKYS 240 HNFTGFKTEI ENDHQGLFSD NHQGGEPRRN RSPMLSHHLS LPKISGEIVA MEKLLQFRDT 300 TTVPCKIRAK RGCATHPRSI AERVRRTRIS ERMKKLQELV PNMDKQTNTA DMLDLAVHYI 360 KDLRKQYKTL SEFRANCRCS DTHKSVSVVD HEEF

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MDSDDDSTNE NNSGLLRYRS APSSFLANFC SDIIGADDDD DHHHKRVKIS TIETETQWFM  60
TSGQQQSNSQ FSSHVLKDNS NDFALNSPQL PPHPQYPRSN AITQLNGGFL FRVQNSNLMR  120
QNSSPAGFFS HLSPQNANGY AGSAFPNGAS TGTSAVLSPS SNRFSSGNGI PSNLGMMLSR  180
ISESENENPI PGRTNNINIP DPEPDHQKLS NASNNRESQL YCPPLPFSSR NNNNNSSKYS  240
HNFTGFKTEI ENDHQGLFSD NHQGGEPRRN RSPMLSHHLS LPKISGEIVA MEKLLQFRDT  300
TTVPCKIRAK RGCATHPRSI AERVRRTRIS ERMKKLQELV PNMDKQTNTA DMLDLAVHYI  360
KDLRKQYKTL SEFRANCRCS DTHKSVSVVD HEEF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027070406.1	3e-98	transcription factor bHLH130-like
TrEMBL	A0A068UR53	8e-93	A0A068UR53_COFCA; Uncharacterized protein
STRING	Solyc10g079050.1.1	3e-92	(Solanum lycopersicum)