PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_14860_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 407aa MW: 45623.2 Da PI: 8.5777

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_14860_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.4	7.9e-11	319	376	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...........TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as........kapskKlsKaeiLekAveYIksL 54 +++Er RR ri +++ +L+el+P+ + + K + a++L +Av+YIk+L cra_locus_14860_iso_3_len_1585_ver_3 319 SIAERVRRTRISERMKKLQELVPNmDKvssskayqPRQLYKXNTADMLDLAVHYIKDL 376 689*******************988**99888889*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.967	313	376	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-12	316	390	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.13E-10	317	379	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.2E-11	318	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-8	319	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.7E-8	319	376	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MDSDDDSTNE NNSGLLRYRS APSSFLANFC SDIIGADDDD DHHHKRVKIS TIETETQWFM 60 TSGQQQSNSQ FSSHVLKDNS NDFALNSPQL PPHPQYPRSN AITQLNGGFL FRVQNSNLMR 120 QNSSPAGFFS HLSPQNANGY AGSAFPNGAS TGTSAVLSPS SNRFSSGNGI PSNLGMMLSR 180 ISESENENPI PGRTNNINIP DPEPDHQKLS NASNNRESQL YCPPLPFSSR NNNNNSSKYS 240 HNFTGFKTEI ENDHQGLFSD NHQGGEPRRN RSPMLSHHLS LPKISGEIVA MEKLLQFRDT 300 TTVPCKIRAK RGCATHPRSI AERVRRTRIS ERMKKLQELV PNMDKVSSSK AYQPRQLYKX 360 NTADMLDLAV HYIKDLRKQY KTLSEFRANC RCSDTHKSVS VVDHEEF

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MDSDDDSTNE NNSGLLRYRS APSSFLANFC SDIIGADDDD DHHHKRVKIS TIETETQWFM  60
TSGQQQSNSQ FSSHVLKDNS NDFALNSPQL PPHPQYPRSN AITQLNGGFL FRVQNSNLMR  120
QNSSPAGFFS HLSPQNANGY AGSAFPNGAS TGTSAVLSPS SNRFSSGNGI PSNLGMMLSR  180
ISESENENPI PGRTNNINIP DPEPDHQKLS NASNNRESQL YCPPLPFSSR NNNNNSSKYS  240
HNFTGFKTEI ENDHQGLFSD NHQGGEPRRN RSPMLSHHLS LPKISGEIVA MEKLLQFRDT  300
TTVPCKIRAK RGCATHPRSI AERVRRTRIS ERMKKLQELV PNMDKVSSSK AYQPRQLYKX  360
NTADMLDLAV HYIKDLRKQY KTLSEFRANC RCSDTHKSVS VVDHEEF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027070406.1	4e-93	transcription factor bHLH130-like
TrEMBL	A0A068UR53	6e-88	A0A068UR53_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5194	24	37