PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_14860_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 257aa MW: 28753.1 Da PI: 9.4744 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.7 | 3.6e-12 | 182 | 226 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+L cra_locus_14860_iso_2_len_1211_ver_3 182 SIAERVRRTRISERMKKLQELVPNM----DKQTNTADMLDLAVHYIKDL 226 689*********************7....688***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.875 | 176 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-15 | 179 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.52E-11 | 180 | 229 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.7E-14 | 181 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-9 | 182 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-12 | 182 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
AGYAGSAFPN GASTGTSAVL SPSSNRFSSG NGIPSNLGMM LSRISESENE NPIPGRTNNI 60 NIPDPEPDHQ KLSNASNNRE SQLYCPPLPF SSRNNNNNSS KYSHNFTGFK TEIENDHQGL 120 FSDNHQGGEP RRNRSPMLSH HLSLPKISGE IVAMEKLLQF RDTTTVPCKI RAKRGCATHP 180 RSIAERVRRT RISERMKKLQ ELVPNMDKQT NTADMLDLAV HYIKDLRKQY KTLSEFRANC 240 RCSDTHKSVS VVDHEEF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027070406.1 | 4e-82 | transcription factor bHLH130-like | ||||
Swissprot | Q66GR3 | 1e-54 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | A0A068UR53 | 1e-79 | A0A068UR53_COFCA; Uncharacterized protein | ||||
STRING | Solyc10g079050.1.1 | 2e-70 | (Solanum lycopersicum) |
Publications ? help Back to Top | |||
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