PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_14834_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NF-YB | ||||||||
Protein Properties | Length: 170aa MW: 19028.7 Da PI: 4.7023 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 35.2 | 3e-11 | 36 | 130 | 7 | 96 |
NF-YB 7 flPianvsrimkkvlPa...na..kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlG 75 +lP + v r++k l + ++ + +++ + e + fi ++++ a+d c++ kr+ in++d++ al ++ cra_locus_14834_iso_2_len_728_ver_3 36 ELPKTIVRRLVKDKLSQlssDSemSVLRESLQAFSESARIFIHYLSATANDICRESKRQIINAEDVFKALEEIE 109 68888899999987654111331145578889999*************************************** PP NF-YB 76 fedyveplkvylkkyrelege 96 f ++++pl++ l+ +++e++ cra_locus_14834_iso_2_len_728_ver_3 110 FPEFAAPLRASLEGXKNAEKK 130 ************999998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.0E-27 | 33 | 166 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.6E-8 | 36 | 105 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.71E-20 | 37 | 160 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
XNFHAKMLEK EKKKAEENGE TAEAPATAVA VVEREELPKT IVRRLVKDKL SQLSSDSEMS 60 VLRESLQAFS ESARIFIHYL SATANDICRE SKRQIINAED VFKALEEIEF PEFAAPLRAS 120 LEGXKNAEKK SGLAKESNNR KGKRKEPPVA EKADKEDGNE DEEVEDSADD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5y26_A | 1e-12 | 37 | 141 | 18 | 121 | DNA polymerase epsilon subunit D |
5y27_A | 1e-12 | 37 | 141 | 18 | 121 | DNA polymerase epsilon subunit D |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027181522.1 | 9e-63 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A3G1TVN9 | 1e-60 | A0A3G1TVN9_COFCA; DNA polymerase epsilon subunit 3 | ||||
STRING | Migut.D02442.1.p | 1e-53 | (Erythranthe guttata) |