PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_14775_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

SRS

Protein Properties

Length: 434aa MW: 45080.6 Da PI: 8.6257

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_14775_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	216.7	5.2e-67	213	372	4	153
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkr 76 t++CqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpaa+rrerq + +a + +a ++++ s +k+ cra_locus_14775_iso_1_len_2037_ver_3 213 STTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCSTHVKSTWVPAARRRERQLMVSAGPAAVTAGSTQSISSSKK 285 5789*******************************************999999888888888888888888 PP DUF702 77 elkskkqsalsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsig 139 + s+++ ++s+t++s+++++++++t s lP +v+++avf+cvrv+svddge+e+aYq+ v ig cra_locus_14775_iso_1_len_2037_ver_3 286 PKLSSQTPTASRTSTSNTTPPRSFDTGSshqdasfketLPGQVRAPAVFKCVRVTSVDDGEDEYAYQAMVRIG 358 88889999999**********99999*************************************** PP DUF702 140 GhvfkGiLydqGle 153 GhvfkG+LydqG+e cra_locus_14775_iso_1_len_2037_ver_3 359 GHVFKGFLYDQGVE 372 **********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.8E-62	214	372	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.2E-27	216	258	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.4E-29	324	371	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
KNLSTVVATT RRLGSDSGTV TDWVAASSSS AARDLSLGFN AGPTAGGGGG GTGPGPTPGG 60 GGLTGMWSSS SNRQINYGIA SEMGMVGHLR DVFLVTPATT TTATNFHHHQ EPTSTINFDP 120 HHSINGSNSS AIGVNVIPLL TPCLAQPNVG VDEDLLLNNN RSNNRGGCAI QFWQNQTQPN 180 QRVSNSNFKK PSILDHSCRE IGSGSSINSA STSTTTCQDC GNQAKKDCSH RRCRTCCKSR 240 GFDCSTHVKS TWVPAARRRE RQLMVSAGPA AVTAGSTQSI SSSKKPKLSS QTPTASRTST 300 SNTTPPRSFD TGSSHQDASF KETLPGQVRA PAVFKCVRVT SVDDGEDEYA YQAMVRIGGH 360 VFKGFLYDQG VEGRDGSSSF PNISDLHLGG GGRNGGASSS SQAAAVAAAA MIDPSDVYAA 420 GLLGGSSNYG NQIN

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

KNLSTVVATT RRLGSDSGTV TDWVAASSSS AARDLSLGFN AGPTAGGGGG GTGPGPTPGG  60
GGLTGMWSSS SNRQINYGIA SEMGMVGHLR DVFLVTPATT TTATNFHHHQ EPTSTINFDP  120
HHSINGSNSS AIGVNVIPLL TPCLAQPNVG VDEDLLLNNN RSNNRGGCAI QFWQNQTQPN  180
QRVSNSNFKK PSILDHSCRE IGSGSSINSA STSTTTCQDC GNQAKKDCSH RRCRTCCKSR  240
GFDCSTHVKS TWVPAARRRE RQLMVSAGPA AVTAGSTQSI SSSKKPKLSS QTPTASRTST  300
SNTTPPRSFD TGSSHQDASF KETLPGQVRA PAVFKCVRVT SVDDGEDEYA YQAMVRIGGH  360
VFKGFLYDQG VEGRDGSSSF PNISDLHLGG GGRNGGASSS SQAAAVAAAA MIDPSDVYAA  420
GLLGGSSNYG NQIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010651514.2	1e-128	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	5e-81	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A438KG41	1e-127	A0A438KG41_VITVI; protein lateral ROOT PRIMORDIUM 1
STRING	XP_009604000.1	1e-125	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7655	23	31

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]