PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_14744_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C3H

Protein Properties

Length: 338aa MW: 38111.4 Da PI: 7.8254

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_14744_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.8	1.8e-08	90	110	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+r G C++Gd+C FaHg cra_locus_14744_iso_1_len_1300_ver_3 90 VCAEFRR-GNCSRGDNCEFAHG 110 7999*.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	4.4E-5	84	114	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.4E-6	85	111	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.197	86	112	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.7E-6	89	112	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-6	90	110	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.4	120	143	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.287	120	144	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010187	Biological Process	negative regulation of seed germination
GO:0005634	Cellular Component	nucleus
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
AAAASSIDLF MDSPGKVEEA ALLQKFLPYN SINDDDDADP YSSDHFRMYE FKVRKCTRSR 60 SHDWTDCPFA HPGEKARRRD PRRYHYSGTV CAEFRRGNCS RGDNCEFAHG VFECWLHPSR 120 YRTEACKDGK NCKRKVCFFA HTPRQLRVLP VNCNENISSP VNNSIEKKYK NMNNCCVYCH 180 SVSTNSPTST LIGIPNYSPP MSPSLSPPLS PVKSARFSPV SRYKDNFAQF NSSNSSSGGL 240 SYKDAMNELM NSIEAMHVNE IASPNGRNLQ FLDVNFNNGD DQPQFILSPS TSTPSPSPTK 300 FHHGRFSNKN FIEENKYYED INGGFSGPDL GWVNDLLT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269\|PubMed:18487351}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027172397.1	1e-165	zinc finger CCCH domain-containing protein 2-like
Swissprot	Q9ZWA1	1e-90	C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBL	A0A068V4M8	1e-156	A0A068V4M8_COFCA; Uncharacterized protein
STRING	XP_009789499.1	1e-129	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10595	21	25

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chang G, et al. AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana. Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238 [PMID:29723526]