PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_14696_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 25759.2 Da PI: 4.4078 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.2e-17 | 29 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr +k +g++v+eIr p++ r r++lg+++tae+Aa+a +aa +l+g cra_locus_14696_iso_1_len_977_ver_3 29 KYKGVRKRK-WGKFVSEIRLPNS---RERIWLGSYDTAEKAARAFDAALFCLRG 78 8*****999.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.8E-29 | 29 | 87 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-10 | 29 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.82E-20 | 29 | 87 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.496 | 29 | 86 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-32 | 29 | 92 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.27E-28 | 29 | 88 | No hit | No description |
PRINTS | PR00367 | 2.7E-9 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-9 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MVKKSVVREE SFSSSSSSSE RINGFHSDKY KGVRKRKWGK FVSEIRLPNS RERIWLGSYD 60 TAEKAARAFD AALFCLRGKS AKFNFPDNPP EIVNGRSMTP AEIQVAAARY ANSDATRDTS 120 GSGRVDNLDS SYSSVSSFSE PELRVDSPCP SVSDGGAVQV ENEISEIPLD TAFLDNFSIM 180 GTGENSNVAD FGIFPGFDDF FGAPLPCSNI DFYDGEENYN EGFSSSQDSF LWNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-17 | 24 | 86 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 30 | 36 | KGVRKRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00151 | DAP | Transfer from AT1G19210 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027065228.1 | 9e-86 | ethylene-responsive transcription factor ERF017-like | ||||
TrEMBL | A0A068U3G4 | 5e-84 | A0A068U3G4_COFCA; Uncharacterized protein | ||||
STRING | XP_009624342.1 | 9e-70 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1939 | 24 | 66 |